Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_F18
         (885 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039053-5|AAC25875.2|  293|Caenorhabditis elegans Serpentine re...    33   0.21 
AC024806-2|AAK84613.1|  433|Caenorhabditis elegans Hypothetical ...    29   3.3  
AM748823-1|CAO72177.1|  491|Caenorhabditis elegans hexosaminidas...    29   5.8  
U21321-11|AAG00044.1|  460|Caenorhabditis elegans Hypothetical p...    28   7.7  

>AF039053-5|AAC25875.2|  293|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 23 protein.
          Length = 293

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
 Frame = +1

Query: 373 ETIKNLCSIYRVFYCSVSASMQSCIRLRLSAFSNLRTFNQLFFREYNT----SVILCIIK 540
           ETI +   +  +   +V  S Q+ + L +S   N+  F  +F+R + +    SVILC+I 
Sbjct: 77  ETINHFTLLSGLLVWNVGIS-QAVVALMISIERNMAIFTPIFYRNHRSLVTNSVILCLIF 135

Query: 541 IFIQIRYLFLY 573
            +   +Y F+Y
Sbjct: 136 GYAIFQYSFIY 146


>AC024806-2|AAK84613.1|  433|Caenorhabditis elegans Hypothetical
           protein Y52E8A.4 protein.
          Length = 433

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 280 EAEIFRNSRFL*YTDFFLNSFSTLEARREFCETI 381
           ++++ +N   L + + F+NSF  L+  R FC TI
Sbjct: 199 QSQVSQNQAILPFCETFVNSFKLLKTPRMFCFTI 232


>AM748823-1|CAO72177.1|  491|Caenorhabditis elegans hexosaminidase
           protein.
          Length = 491

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 769 NHSSXVCNYGPAYVAIPLLTIQIXYMSYQL 858
           NH + +C   P  VAIP L + + Y++YQL
Sbjct: 348 NHFNALCELLP--VAIPSLIVDLFYLNYQL 375


>U21321-11|AAG00044.1|  460|Caenorhabditis elegans Hypothetical
           protein ZK177.1 protein.
          Length = 460

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 466 FSNLRTFNQLFFREYNTSVILCIIKIFIQIRYLFLYGK 579
           F  LRT+ +LF   +NTS++     ++   R L  +G+
Sbjct: 15  FLGLRTYQKLFESVFNTSILHSFFSLYTPCRLLRSFGQ 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,315,677
Number of Sequences: 27780
Number of extensions: 419415
Number of successful extensions: 900
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)