Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_F17
(942 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 38 0.002
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 34 0.033
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.044
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.41
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.3
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 1.3
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 2.9
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 23 4.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 24 6.9
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 26 8.8
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 22 9.6
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 38.3 bits (85), Expect = 0.002
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = +3
Query: 522 PPPPXGXGGXXXPPPPPPPXKXPXG 596
PPPP G G PPPPPPP G
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAG 788
Score = 34.3 bits (75), Expect = 0.025
Identities = 24/67 (35%), Positives = 28/67 (41%)
Frame = +3
Query: 522 PPPPXGXGGXXXPPPPPPPXKXPXGXVXGGGGXXPPPXGGGXXPPXXRGXPXKKFFXXGP 701
PPP GG PPPPPP P G V G G PPP PP +++ P
Sbjct: 752 PPPAPIMGG----PPPPPP---PPG-VAGAGPPPPPP------PPPAVSAGGSRYYAPAP 797
Query: 702 XPXPKKK 722
P+ K
Sbjct: 798 QAEPEPK 804
Score = 33.9 bits (74), Expect = 0.033
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = +3
Query: 516 KXPPPPXGXGGXXXPPPPPPPXKXPXGXVXGGGGXXPPPXGGGXXPP 656
K PPPP P P P P P + G PPP G PP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776
Score = 28.7 bits (61), Expect = 1.3
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -3
Query: 643 PPPXGGGXXPPPPXTXPXGFXXGG 572
PPP G PPPP P GG
Sbjct: 766 PPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 27.9 bits (59), Expect = 2.2
Identities = 16/53 (30%), Positives = 18/53 (33%)
Frame = -3
Query: 643 PPPXGGGXXPPPPXTXPXGFXXGGGGGGGXXXPPXPXGGGGFFXXKKXXPPPP 485
P P GG PPPP P G G P GG ++ P P
Sbjct: 754 PAPIMGGPPPPPP---PPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 27.5 bits (58), Expect = 2.9
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 803 GGXXPPPXKKKXXGXPPXXTPPPXP 877
GG PPP G P PPP P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -2
Query: 668 PPXXGGXXPPPXGGXXPPPPPXHXAXG 588
PP G PPP PPPPP + G
Sbjct: 767 PPGVAGAGPPP-----PPPPPPAVSAG 788
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 33.9 bits (74), Expect = 0.033
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +3
Query: 522 PPPPXGXGGXXXPPPPPPP 578
PPPP G PPPPPPP
Sbjct: 12 PPPPPGFEPPSQPPPPPPP 30
Score = 28.3 bits (60), Expect = 1.7
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +3
Query: 522 PPPPXGXGGXXXPPPPPPPXKXPXGXVXGGGGXXPPPXG 638
PPPP G P PPPP P G V P G
Sbjct: 9 PPPPPPPPGFEPPSQPPPP--PPPGYVKKRKNKTPAQSG 45
Score = 28.3 bits (60), Expect = 1.7
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +1
Query: 523 PPPXXXXGXXXXPPPPPPP 579
PPP PPPPPPP
Sbjct: 12 PPPPPGFEPPSQPPPPPPP 30
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 547 PPXPXGGGGFFXXKKXXPPPPPXGKKK 467
PP P GF + PPPPP KK
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPGYVKK 35
Score = 25.8 bits (54), Expect = 8.8
Identities = 11/27 (40%), Positives = 11/27 (40%)
Frame = +3
Query: 558 PPPPPPPXKXPXGXVXGGGGXXPPPXG 638
PP PPP P G PPP G
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.5 bits (73), Expect = 0.044
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = +3
Query: 522 PPPPXGXGGXXXPPPPPPPXKXPXGXVXGGGGXXPPPXGGGXXPPXXRGXP 674
PP G PPPPPPP G + PP PP R P
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSI-----PLPPQGRSAPPPPPPRSAP 370
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
Frame = +3
Query: 558 PPPPPPP-----XKXPXGXVXGGGGXXPPP 632
PPPPPPP K P G PPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPP 340
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 30.3 bits (65), Expect = 0.41
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -3
Query: 589 GFXXGGGGGGGXXXPPXPXGGGGF 518
G GG GGG PP P G GGF
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGF 210
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = -3
Query: 631 GGGXXPPPPXTXPXGFXXGGGGGGGXXXPPXPXGGGG 521
GGG PPP P GF GG GG G GG
Sbjct: 194 GGGSGGPPP--GPGGFGGFGGFGGEGHHHGGHGGFGG 228
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/44 (29%), Positives = 14/44 (31%)
Frame = +3
Query: 522 PPPPXGXGGXXXPPPPPPPXKXPXGXVXGGGGXXPPPXGGGXXP 653
PP P G PPP P + G P P G P
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPP 1093
Score = 28.7 bits (61), Expect = 1.3
Identities = 17/51 (33%), Positives = 17/51 (33%)
Frame = +3
Query: 522 PPPPXGXGGXXXPPPPPPPXKXPXGXVXGGGGXXPPPXGGGXXPPXXRGXP 674
PP P G PP PPP P G PPP P G P
Sbjct: 1179 PPVPKPAAGV--PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227
Score = 27.1 bits (57), Expect = 3.8
Identities = 20/66 (30%), Positives = 20/66 (30%), Gaps = 2/66 (3%)
Frame = +3
Query: 522 PPPPXGXGGXXXPPPPPPPXKXPXGXVXGGGGXXPPPXGGGXXPPXXRGXP--XKKFFXX 695
PP P G PP P P P V G P P P G P K
Sbjct: 1112 PPVPAPSGA---PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAA 1168
Query: 696 GPXPXP 713
P P P
Sbjct: 1169 PPVPAP 1174
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.0 bits (52), Expect(2) = 1.3
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +1
Query: 559 PPPPPPPXKXP 591
PPPPPPP P
Sbjct: 238 PPPPPPPTLPP 248
Score = 21.8 bits (44), Expect(2) = 1.3
Identities = 8/19 (42%), Positives = 8/19 (42%)
Frame = +1
Query: 523 PPPXXXXGXXXXPPPPPPP 579
PP P PPPPP
Sbjct: 224 PPTYTPKQADPLPAPPPPP 242
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 27.5 bits (58), Expect = 2.9
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +3
Query: 543 GGXXXPPPPPPP 578
GG PPPPPPP
Sbjct: 303 GGLPPPPPPPPP 314
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 22.6 bits (46), Expect(2) = 4.8
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +3
Query: 561 PPPPPPXKXP 590
PPPPPP P
Sbjct: 356 PPPPPPMPAP 365
Score = 22.2 bits (45), Expect(2) = 4.8
Identities = 9/24 (37%), Positives = 10/24 (41%)
Frame = +3
Query: 504 FFXKKXPPPPXGXGGXXXPPPPPP 575
F + P P G PPPP P
Sbjct: 340 FAGNQVMPTPQVQGSRPPPPPPMP 363
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 23.8 bits (49), Expect(2) = 6.9
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +1
Query: 562 PPPPPPXKXPXA 597
PPPPPP P A
Sbjct: 5 PPPPPPAPAPAA 16
Score = 20.6 bits (41), Expect(2) = 6.9
Identities = 6/7 (85%), Positives = 6/7 (85%)
Frame = +1
Query: 559 PPPPPPP 579
P PPPPP
Sbjct: 3 PAPPPPP 9
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 25.8 bits (54), Expect = 8.8
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Frame = -2
Query: 722 FFFGGXXGXXXK--KFFXGXPPXXGGXXPPPXGGXXPPPPPXHXAXGXFXGGGGG 564
F G G + + + PP G P GG P H G F G GGG
Sbjct: 80 FMVGALAGSVLRGHRAYYAPPPPRGPLFGPRIGGGHHGP--LHGPHGGFGGRGGG 132
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 22.2 bits (45), Expect(2) = 9.6
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +3
Query: 564 PPPPPXKXPXGXVXGG 611
PPPPP P GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960
Score = 21.4 bits (43), Expect(2) = 9.6
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +3
Query: 558 PPPPPPPXK 584
PPPPP P K
Sbjct: 908 PPPPPLPVK 916
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,752
Number of Sequences: 5004
Number of extensions: 32908
Number of successful extensions: 366
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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