Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_F17
         (942 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    25   0.75 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   0.78 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   9.3  

>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 25.4 bits (53), Expect = 0.75
 Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
 Frame = +3

Query: 528 PPXGXGGXXXPPPPPPPXKXPXGXVXG--GGGXXPP 629
           P    G    PP PPP  +   G + G  G G  PP
Sbjct: 42  PRSNRGPVLFPPGPPPNNEDSSGVIVGASGYGFVPP 77


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect(2) = 0.78
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 546  GXXXPPPPPP 575
            G   PPPPPP
Sbjct: 1855 GSPEPPPPPP 1864



 Score = 21.0 bits (42), Expect(2) = 0.78
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 558  PPPPPPPXK 584
            P PPPPP +
Sbjct: 1857 PEPPPPPPR 1865


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 558  PPPPPPP 578
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 559  PPPPPPP 579
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 558  PPPPPPP 578
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 559  PPPPPPP 579
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 558 PPPPPPPXKXP 590
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 5.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 559 PPPPPPPXKXP 591
           PPPPPP    P
Sbjct: 343 PPPPPPSSSGP 353


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = -2

Query: 656 GGXXPPPXGGXXPPPP 609
           GG  PP  G   PP P
Sbjct: 406 GGQLPPSAGAPMPPIP 421


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,308
Number of Sequences: 438
Number of extensions: 8212
Number of successful extensions: 28
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30839445
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)