Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_F15
         (1109 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    30   3.4  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    30   3.4  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    30   3.4  
Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical pr...    29   4.5  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 20/87 (22%), Positives = 24/87 (27%), Gaps = 1/87 (1%)
 Frame = +3

Query: 537 PPVAXGXGXXXPXXVXXXSSXXADPHPXPGXPXXXLHGXXPGXVXXXXXXAPSPXGXXGS 716
           PP+  G     P       +    P P PG       G  P          P P    G 
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 779

Query: 717 XXAXXPPAXPXRLXCPREPT-XXWFPP 794
                PP  P  +  P  P    + PP
Sbjct: 780 FKGGPPPPPPPGMFAPMAPVIPDYLPP 806


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 20/87 (22%), Positives = 24/87 (27%), Gaps = 1/87 (1%)
 Frame = +3

Query: 537 PPVAXGXGXXXPXXVXXXSSXXADPHPXPGXPXXXLHGXXPGXVXXXXXXAPSPXGXXGS 716
           PP+  G     P       +    P P PG       G  P          P P    G 
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 779

Query: 717 XXAXXPPAXPXRLXCPREPT-XXWFPP 794
                PP  P  +  P  P    + PP
Sbjct: 780 FKGGPPPPPPPGMFAPMAPVIPDYLPP 806


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 20/87 (22%), Positives = 24/87 (27%), Gaps = 1/87 (1%)
 Frame = +3

Query: 537 PPVAXGXGXXXPXXVXXXSSXXADPHPXPGXPXXXLHGXXPGXVXXXXXXAPSPXGXXGS 716
           PP+  G     P       +    P P PG       G  P          P P    G 
Sbjct: 303 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 362

Query: 717 XXAXXPPAXPXRLXCPREPT-XXWFPP 794
                PP  P  +  P  P    + PP
Sbjct: 363 FKGGPPPPPPPGMFAPMAPVIPDYLPP 389


>Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical
           protein T28C6.1 protein.
          Length = 281

 Score = 29.5 bits (63), Expect = 4.5
 Identities = 18/56 (32%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
 Frame = -2

Query: 925 GRWGRXRGAXPXGGG-GXXXVXNXXNXXVXXGCXXXWXGAXXRXCGGNQXXVGSRG 761
           G WG  +G    GGG G              G    W G      GGNQ   G RG
Sbjct: 146 GGWGGSQGGQNGGGGRGGSGGQGGWGGSQDGGSQGGWGGQNGGGQGGNQGGGGGRG 201


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,664,144
Number of Sequences: 27780
Number of extensions: 207987
Number of successful extensions: 224
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 3002662306
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)