Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_F13
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   0.11 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   5.6  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 420 FXXPXNPPPPPPXXXKKK 367
           F  P  PPPPPP    KK
Sbjct: 18  FEPPSQPPPPPPPGYVKK 35



 Score = 25.8 bits (54), Expect(2) = 0.11
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -3

Query: 411 PXNPPPPPP 385
           P NPPPPPP
Sbjct: 6   PGNPPPPPP 14



 Score = 24.6 bits (51), Expect(2) = 0.11
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 402 PPPPPPXXXKKK 367
           PPPPPP   KK+
Sbjct: 25  PPPPPPGYVKKR 36


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 22.6 bits (46), Expect(2) = 5.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 411 PXNPPPPPP 385
           P  PPPPPP
Sbjct: 775 PPPPPPPPP 783



 Score = 21.8 bits (44), Expect(2) = 5.6
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -3

Query: 402 PPPPPPXXXKKKXGPXXF*P 343
           PPPPPP       G   + P
Sbjct: 776 PPPPPPPPAVSAGGSRYYAP 795


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.148    0.506 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,389,227
Number of Sequences: 5004
Number of extensions: 11310
Number of successful extensions: 62
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)