Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_F13
(893 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0080 + 587674-588510 29 0.070
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 27 0.40
11_01_0133 + 1121392-1122731,1123417-1123858 25 4.4
09_01_0016 - 376742-376883,377973-378964 24 5.9
03_05_0732 - 27232299-27232535,27232717-27232746,27233094-272331... 24 5.9
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093... 24 7.1
09_06_0148 - 21214460-21214561,21214993-21215339,21215428-212155... 24 7.8
03_02_0350 - 7734494-7734952,7735765-7736133 28 8.7
>07_01_0080 + 587674-588510
Length = 278
Score = 28.7 bits (61), Expect(2) = 0.070
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 447 PXFXGGXXXFXXPXNPPPPPP 385
P GG F P PPPPPP
Sbjct: 79 PPRLGGDGMFRRPPPPPPPPP 99
Score = 25.4 bits (53), Expect(2) = 0.070
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -3
Query: 411 PXNPPPPPPXXXKKKXGP 358
P PPPPPP ++ P
Sbjct: 113 PPPPPPPPPLFTRRSHAP 130
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 27.5 bits (58), Expect(2) = 0.40
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = -3
Query: 459 PXXXPXFXGGXXXFXXPXNPPPPPP 385
P P G F P PPPPPP
Sbjct: 548 PPPPPPPSGNKPAFSPPPPPPPPPP 572
Score = 23.8 bits (49), Expect(2) = 0.40
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = -3
Query: 411 PXNPPPPPPXXXKKKXGP 358
P PPPPPP + P
Sbjct: 602 PPPPPPPPPILPNRSVPP 619
>11_01_0133 + 1121392-1122731,1123417-1123858
Length = 593
Score = 25.0 bits (52), Expect(2) = 4.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -3
Query: 402 PPPPPPXXXKKKXGP 358
PPPPPP K++ P
Sbjct: 164 PPPPPPQPDKRRREP 178
Score = 22.6 bits (46), Expect(2) = 4.4
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -3
Query: 411 PXNPPPPPP 385
P PPPPPP
Sbjct: 132 PAPPPPPPP 140
>09_01_0016 - 376742-376883,377973-378964
Length = 377
Score = 24.2 bits (50), Expect(2) = 5.9
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 420 FXXPXNPPPPPP 385
F P PPPPPP
Sbjct: 57 FVAPPPPPPPPP 68
Score = 23.0 bits (47), Expect(2) = 5.9
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = -3
Query: 411 PXNPPPPPPXXXKKK 367
P PPPPPP K+
Sbjct: 62 PPPPPPPPPQQNGKE 76
>03_05_0732 -
27232299-27232535,27232717-27232746,27233094-27233155,
27233975-27234005,27234618-27234713,27234881-27234969,
27235687-27236263
Length = 373
Score = 23.8 bits (49), Expect(2) = 5.9
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -3
Query: 402 PPPPPPXXXKKKXGPXXF*P 343
PPPPPP GP + P
Sbjct: 81 PPPPPPPMGAPGFGPFRWSP 100
Score = 23.4 bits (48), Expect(2) = 5.9
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -3
Query: 411 PXNPPPPPP 385
P PPPPPP
Sbjct: 51 PHQPPPPPP 59
>01_06_1670 -
39007402-39008229,39008320-39008567,39009159-39009364,
39009454-39011054
Length = 960
Score = 24.2 bits (50), Expect(2) = 7.1
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 420 FXXPXNPPPPPP 385
F P PPPPPP
Sbjct: 351 FGQPPAPPPPPP 362
Score = 22.6 bits (46), Expect(2) = 7.1
Identities = 8/18 (44%), Positives = 8/18 (44%)
Frame = -3
Query: 411 PXNPPPPPPXXXKKKXGP 358
P PPPPPP P
Sbjct: 365 PTLPPPPPPRRKPPSPSP 382
>09_06_0148 -
21214460-21214561,21214993-21215339,21215428-21215538,
21215673-21215835,21215921-21215999,21216110-21216228
Length = 306
Score = 24.2 bits (50), Expect(2) = 7.8
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -3
Query: 402 PPPPPPXXXKKKXG 361
PPPPPP +++ G
Sbjct: 205 PPPPPPARGRRRRG 218
Score = 22.6 bits (46), Expect(2) = 7.8
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -3
Query: 411 PXNPPPPPP 385
P PPPPPP
Sbjct: 201 PAAPPPPPP 209
>03_02_0350 - 7734494-7734952,7735765-7736133
Length = 275
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 387 GGGGGGXGXXXXXXNPXKXGGXXGG 461
GGGGGG G P GG GG
Sbjct: 12 GGGGGGGGSGGGGGGPSGGGGGGGG 36
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.148 0.506
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,229,397
Number of Sequences: 37544
Number of extensions: 228759
Number of successful extensions: 4933
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4191
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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