Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_F13
         (893 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D10877-1|BAA01645.1|  346|Caenorhabditis elegans hnRNP like prot...    29   5.9  
AF038613-8|AAL02515.2|  309|Caenorhabditis elegans Human hnrnp a...    29   5.9  
AF038613-7|ABB51185.1|  308|Caenorhabditis elegans Human hnrnp a...    29   5.9  
AF038613-6|ABB51186.1|  347|Caenorhabditis elegans Human hnrnp a...    29   5.9  
AF038613-5|AAB92051.1|  346|Caenorhabditis elegans Human hnrnp a...    29   5.9  
AL110490-3|CAB54449.1|  892|Caenorhabditis elegans Hypothetical ...    25   6.4  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    25   8.9  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    25   8.9  

>D10877-1|BAA01645.1|  346|Caenorhabditis elegans hnRNP like protein
           protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +3

Query: 387 GGGGGGXGXXXXXXNPXKXGGXXGG 461
           GGGGGG G       P   GG  GG
Sbjct: 223 GGGGGGWGGPAQRGGPGAYGGPGGG 247


>AF038613-8|AAL02515.2|  309|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform b protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +3

Query: 387 GGGGGGXGXXXXXXNPXKXGGXXGG 461
           GGGGGG G       P   GG  GG
Sbjct: 185 GGGGGGWGGPAQRGGPGAYGGPGGG 209


>AF038613-7|ABB51185.1|  308|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform c protein.
          Length = 308

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +3

Query: 387 GGGGGGXGXXXXXXNPXKXGGXXGG 461
           GGGGGG G       P   GG  GG
Sbjct: 185 GGGGGGWGGPAQRGGPGAYGGPGGG 209


>AF038613-6|ABB51186.1|  347|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform d protein.
          Length = 347

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +3

Query: 387 GGGGGGXGXXXXXXNPXKXGGXXGG 461
           GGGGGG G       P   GG  GG
Sbjct: 223 GGGGGGWGGPAQRGGPGAYGGPGGG 247


>AF038613-5|AAB92051.1|  346|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform a protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +3

Query: 387 GGGGGGXGXXXXXXNPXKXGGXXGG 461
           GGGGGG G       P   GG  GG
Sbjct: 223 GGGGGGWGGPAQRGGPGAYGGPGGG 247


>AL110490-3|CAB54449.1|  892|Caenorhabditis elegans Hypothetical
           protein Y48B6A.3 protein.
          Length = 892

 Score = 25.4 bits (53), Expect(2) = 6.4
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +3

Query: 387 GGGGGGXGXXXXXXNPXKXGGXXGG 461
           GGGGGG G      N  +  G  GG
Sbjct: 841 GGGGGGGGSYHQPYNQDQRRGGRGG 865



 Score = 21.4 bits (43), Expect(2) = 6.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 381 FXGGGGGGXG 410
           + GGGGGG G
Sbjct: 835 YGGGGGGGGG 844


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 24.6 bits (51), Expect(2) = 8.9
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 856 PPPXXPPPGR 885
           PPP  PPPGR
Sbjct: 307 PPPPPPPPGR 316



 Score = 21.8 bits (44), Expect(2) = 8.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 850 PXPPPXXPPPG 882
           P PPP  P PG
Sbjct: 282 PMPPPMPPTPG 292


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 24.6 bits (51), Expect(2) = 8.9
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 856 PPPXXPPPGR 885
           PPP  PPPGR
Sbjct: 297 PPPPPPPPGR 306



 Score = 21.8 bits (44), Expect(2) = 8.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 850 PXPPPXXPPPG 882
           P PPP  P PG
Sbjct: 272 PMPPPMPPTPG 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.315    0.148    0.506 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,996,114
Number of Sequences: 27780
Number of extensions: 133974
Number of successful extensions: 1624
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1415
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)