Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_F12
         (926 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1483 + 26881032-26882035,26882130-26882204,26882324-268828...    29   4.0  
03_03_0106 - 14500935-14501263,14501357-14501432,14501531-14501542     29   5.2  
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863...    28   9.2  

>07_03_1483 +
           26881032-26882035,26882130-26882204,26882324-26882861,
           26883999-26884895,26885178-26885327,26885459-26885791,
           26886501-26886695,26887805-26887918
          Length = 1101

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -2

Query: 148 LWLT-SSKALGLGIIICHPGCN 86
           LWL  +S ++G G IICH GC+
Sbjct: 336 LWLVQNSNSIGQGYIICHLGCH 357


>03_03_0106 - 14500935-14501263,14501357-14501432,14501531-14501542
          Length = 138

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 663 RFSPKXXGXTPEKTF*PKAHKRPXNPKKGPXXXGFFPXGPPP 788
           +F+ +     PEK   P+A K+P +P K P      P  PPP
Sbjct: 62  KFAAEVVSVEPEKK--PEAPKKPDDPPKKPDPPPPCPPPPPP 101


>03_02_0455 -
           8630543-8630893,8630994-8631068,8631149-8631223,
           8631332-8631397,8631891-8631967,8632659-8633070
          Length = 351

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 21/71 (29%), Positives = 25/71 (35%), Gaps = 3/71 (4%)
 Frame = +3

Query: 699 KTF*PKAHKRPXNPKKGPXXXGFFPXGPP---PPXXXXXXXXXPXXXXVGXXPXXEX*KI 869
           KT  P+A+K P  P   P   G  P  PP   PP         P    +G  P      +
Sbjct: 241 KTRQPEANKPPAAPGTLPNGSGGPPRPPPPQVPPPPPQAPPPPPPNAPMGMPPRIPPPPV 300

Query: 870 PXXFPPXXNPP 902
               PP   PP
Sbjct: 301 GGTQPPPPPPP 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,862,520
Number of Sequences: 37544
Number of extensions: 285273
Number of successful extensions: 523
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)