Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_F12
         (926 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72511-3|CAA96657.1|  610|Caenorhabditis elegans Hypothetical pr...    28   8.2  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    28   8.2  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    28   8.2  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    28   8.2  

>Z72511-3|CAA96657.1|  610|Caenorhabditis elegans Hypothetical
           protein F55A11.3 protein.
          Length = 610

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 737 PXKRAGXXGXFPXXPPPPL 793
           P   AG  G FP  PPPPL
Sbjct: 431 PLPMAGPPGMFPMMPPPPL 449


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 18/61 (29%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
 Frame = -1

Query: 692 GXPPXFGGKPXXPXXGXXNXXPXPXXXGXGFXGGXTGXGPKNQ-TPFPXGXXXFLXXKXX 516
           G PP  GG P  P        P P     GF GG     P     P       +L  K  
Sbjct: 750 GLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPPKKV 809

Query: 515 P 513
           P
Sbjct: 810 P 810


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 18/61 (29%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
 Frame = -1

Query: 692 GXPPXFGGKPXXPXXGXXNXXPXPXXXGXGFXGGXTGXGPKNQ-TPFPXGXXXFLXXKXX 516
           G PP  GG P  P        P P     GF GG     P     P       +L  K  
Sbjct: 750 GLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPPKKV 809

Query: 515 P 513
           P
Sbjct: 810 P 810


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 18/61 (29%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
 Frame = -1

Query: 692 GXPPXFGGKPXXPXXGXXNXXPXPXXXGXGFXGGXTGXGPKNQ-TPFPXGXXXFLXXKXX 516
           G PP  GG P  P        P P     GF GG     P     P       +L  K  
Sbjct: 333 GLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPPKKV 392

Query: 515 P 513
           P
Sbjct: 393 P 393


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,329,526
Number of Sequences: 27780
Number of extensions: 200456
Number of successful extensions: 310
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2381234086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)