Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_F08
(885 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 98 1e-21
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 63 6e-11
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 51 3e-07
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 44 2e-05
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 39 0.001
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 35 0.013
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 31 0.29
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo... 29 1.2
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 27 3.6
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 4.7
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 27 4.7
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 26 6.2
SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces pombe... 26 6.2
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 98.3 bits (234), Expect = 1e-21
Identities = 58/141 (41%), Positives = 74/141 (52%), Gaps = 8/141 (5%)
Frame = +1
Query: 349 VSAMPTFIFYRNRTKIDRLEGGNTTVLENKV----RQYYGSDVAEEDEDNTVAGHMDLIT 516
V AMPTF+F+ N +ID L G N L+ KV + G+ V G L
Sbjct: 72 VKAMPTFVFFENGKQIDMLTGANPQALKEKVALISSKATGTGALASSSSAPVKGFASLQG 131
Query: 517 FITKSECECLNEADDHPLAQAL-TNDRGYLAGYCDEQLIINISFNQLVKLHSIKI---KG 684
I + ECLN+ DDH L A +N +L DEQL+I I F ++VK+HSI I KG
Sbjct: 132 CIENPQLECLNQQDDHDLKSAFNSNPSSFLESDVDEQLMIYIPFLEVVKVHSIAITPVKG 191
Query: 685 PADKGPKSIKLFINQPRTLDF 747
PK+IKL+INQP L F
Sbjct: 192 ETSSAPKTIKLYINQPNNLSF 212
Score = 48.4 bits (110), Expect = 1e-06
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = +3
Query: 150 IQNDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKF--PRAVFLKVDVDRC 323
I++ H+ + + +G + VD A WC PC+ I+P F QL +K+ P+ VF KV+VD
Sbjct: 6 IRSYQHWISTIPKSG--YLAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQ 63
Query: 324 ADTASAQG 347
AS G
Sbjct: 64 RQIASGLG 71
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 62.9 bits (146), Expect = 6e-11
Identities = 28/50 (56%), Positives = 35/50 (70%)
Frame = +3
Query: 198 KLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLKVDVDRCADTASAQG 347
KLVVVDF ATWC PC+ IAP FEQ + A F+KVDVD+ ++ A+ G
Sbjct: 19 KLVVVDFFATWCGPCKAIAPKFEQFSNTYSDATFIKVDVDQLSEIAAEAG 68
Score = 32.3 bits (70), Expect = 0.094
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 349 VSAMPTFIFYRNRTKIDRLEGGNTTVLENKVR 444
V AMP+F Y+N KI+ + G N LE ++
Sbjct: 69 VHAMPSFFLYKNGEKIEEIVGANPAKLEASIK 100
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 50.8 bits (116), Expect = 3e-07
Identities = 21/50 (42%), Positives = 31/50 (62%)
Frame = +3
Query: 198 KLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLKVDVDRCADTASAQG 347
K+ VVDF A WC PC+ + PF E+L + +A F+ V+ D+ +D A G
Sbjct: 36 KVTVVDFYADWCGPCKYLKPFLEKLSEQNQKASFIAVNADKFSDIAQKNG 85
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 349 VSAMPTFIFYRNRTKIDRLEGGNTTVLENKVRQY 450
V A+PT + +R ++DR+ G + L + + +Y
Sbjct: 86 VYALPTMVLFRKGQELDRIVGADVKTLSSLLAKY 119
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 44.4 bits (100), Expect = 2e-05
Identities = 17/58 (29%), Positives = 34/58 (58%)
Frame = +3
Query: 168 FQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLKVDVDRCADTASA 341
FQ + N ++++++F A W PC+++ F+Q AVFLK++ ++ +D A +
Sbjct: 11 FQEILQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAKDTKNAVFLKIEAEKFSDIAES 68
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 38.7 bits (86), Expect = 0.001
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +3
Query: 189 AGTKLVVVDFTATWCPPCQRIAPFFEQLPAKFP---RAVFLKVDVDRCADTA 335
A K +++F ATWC C+ +AP +E+L A F + K+D D +D A
Sbjct: 37 ASKKGALIEFYATWCGHCKSLAPVYEELGALFEDHNDVLIGKIDADTHSDVA 88
Score = 37.5 bits (83), Expect = 0.003
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +3
Query: 198 KLVVVDFTATWCPPCQRIAPFFEQLPAKF---PRAVFLKVDVDRCAD 329
K V+V+F A WC C+R+AP +E L F P +K++ D AD
Sbjct: 159 KDVLVEFYADWCGYCKRLAPTYETLGKVFKNEPNVEIVKINADVFAD 205
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 35.1 bits (77), Expect = 0.013
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +3
Query: 195 TKLVVVDFTATWCPPCQRIAPFFEQLPAKF---PRAVFLKVDVDRCADTASAQG 347
TK V+V+F A WC C+ +AP +E+L ++ V K+D + S G
Sbjct: 373 TKDVLVEFYAPWCGHCKNLAPTYEKLAEEYSDDSNVVVAKIDATENDISVSISG 426
Score = 30.7 bits (66), Expect = 0.29
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 198 KLVVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLKVDVD 317
K+++V F A WC C+ +AP +E + + V+VD
Sbjct: 40 KVLMVKFYAPWCGHCKALAPEYESAADELEKDGISLVEVD 79
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 30.7 bits (66), Expect = 0.29
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 135 GLATVIQNDAHFQTEMANAGTKLVVVDFTATWCPPCQRIAPFFEQL 272
G T+ N +F+ + G LVV F A WC C+++ P +++L
Sbjct: 30 GSNTIELNSKNFRKFVKAKGPSLVV--FYAPWCGYCKKLVPTYQKL 73
>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 251 NPLARWTPSCCKVHND*LGSSVSHFSLE 168
NPL RWTP K H G+S S + ++
Sbjct: 442 NPLKRWTPDQAKNHPFITGASFSQYCID 469
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 490 VAGHMDLITFITKSECECLNEADDHP 567
V H+D I FITKS C + E D P
Sbjct: 1285 VVNHIDRIMFITKSLCGEIFEIDKWP 1310
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 226 LGVHRAKGLPLFSSSYQQSFREQYF 300
LGV+R KGL FSS+++ EQ+F
Sbjct: 471 LGVNRYKGLFYFSSAFRPCPIEQHF 495
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 267 QLPAKFPRAVFLKVDVDRCADTASAQ-GRQCNAHIH 371
Q PAKFP +V L+ +D +T Q R H++
Sbjct: 386 QTPAKFPTSVLLRQPIDTYLETMFPQIARNKTEHVY 421
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 415 NTTVLENKVRQYYGSDVAEEDEDNTVAGHM 504
NT+ + + + +YGSD+ E ++D A M
Sbjct: 366 NTSFVSSNINNWYGSDLEELEQDVKTAKSM 395
>SPBC2A9.09 |||phosducin family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 233
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 168 FQTEMANAGTKL-VVVDFTATWCPPCQRIAPFFEQLPAKFPRAVFLKV 308
+ E+ +A ++ VVV P C+ +A E+L +P+ F+K+
Sbjct: 97 YTAEVTDASKEVFVVVHMFQDSLPACKLLAAILERLAPMYPQIKFVKI 144
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,035,567
Number of Sequences: 5004
Number of extensions: 55901
Number of successful extensions: 166
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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