Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_F07
         (924 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6C9I8 Cluster: Similar to sp|P41832 Saccharomyces cere...    36   1.5  
UniRef50_Q8IU42 Cluster: Formin homology protein A; n=2; Dictyos...    33   7.8  

>UniRef50_Q6C9I8 Cluster: Similar to sp|P41832 Saccharomyces
            cerevisiae YNL271c BNI1 regulator of budding; n=1;
            Yarrowia lipolytica|Rep: Similar to sp|P41832
            Saccharomyces cerevisiae YNL271c BNI1 regulator of
            budding - Yarrowia lipolytica (Candida lipolytica)
          Length = 1851

 Score = 35.9 bits (79), Expect = 1.5
 Identities = 16/36 (44%), Positives = 16/36 (44%)
 Frame = +1

Query: 766  PPPPXKXXXGPPXXXXGXFFXXFSPPPPXFXXGPXP 873
            PPPP     GPP    G       PPPP F  GP P
Sbjct: 1049 PPPPPMFTGGPPPMFTGGPPPPPPPPPPGFTGGPPP 1084


>UniRef50_Q8IU42 Cluster: Formin homology protein A; n=2;
           Dictyostelium discoideum|Rep: Formin homology protein A
           - Dictyostelium discoideum (Slime mold)
          Length = 1218

 Score = 33.5 bits (73), Expect = 7.8
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = +1

Query: 766 PPPPXKXXXGPPXXXXGXFFXXFSPPPPXFXXGPXP 873
           PPPP      PP    G       PPPP F  GP P
Sbjct: 709 PPPPPGGGPPPPPPPPGAKAGGPPPPPPPFGKGPPP 744


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 535,129,597
Number of Sequences: 1657284
Number of extensions: 8512072
Number of successful extensions: 54097
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43959
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 84851082477
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)