Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_F07
         (924 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    33   0.38 
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    33   0.38 
AL132860-5|CAB60515.1|  798|Caenorhabditis elegans Hypothetical ...    25   4.0  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    29   4.7  
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.      29   6.2  
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o...    29   6.2  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    28   8.2  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    28   8.2  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    28   8.2  

>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
 Frame = +1

Query: 754 FXXXPPPPXKXXXGPPXXXXGXFFXX-FSPPPPXFXXGP 867
           F   PPPP      PP    G      F PPPP F  GP
Sbjct: 293 FGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGP 331


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
 Frame = +1

Query: 754 FXXXPPPPXKXXXGPPXXXXGXFFXX-FSPPPPXFXXGP 867
           F   PPPP      PP    G      F PPPP F  GP
Sbjct: 293 FGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGP 331


>AL132860-5|CAB60515.1|  798|Caenorhabditis elegans Hypothetical
           protein Y56A3A.6 protein.
          Length = 798

 Score = 25.0 bits (52), Expect(2) = 4.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 908 PPPPPPXXKKKXG 870
           PPPPPP  K++ G
Sbjct: 180 PPPPPPHRKQENG 192



 Score = 22.6 bits (46), Expect(2) = 4.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 923 KKXXXPPPPPP 891
           K+   PPPPPP
Sbjct: 130 KRAAPPPPPPP 140


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 21/56 (37%), Positives = 21/56 (37%), Gaps = 10/56 (17%)
 Frame = +1

Query: 766 PPPPXKXXXGP----PXXXXGXFFXXFSPPPPXFXXG------PXPLFFXXXGGGG 903
           PPPP     GP    P    G       PPPP F  G      P P  F   GGGG
Sbjct: 756 PPPPFGRGAGPMSSFPPPPRGGMHHM--PPPPSFRGGRGGHGGPPPPHFDRRGGGG 809


>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
          Length = 1475

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = +1

Query: 838  PPPPXFXXGPXP-LFFXXXGGGGGG 909
            PPPP    GP P   +    GGGGG
Sbjct: 1322 PPPPPMIRGPPPDQMYRDRSGGGGG 1346


>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
            pal-1 protein 3,isoform a protein.
          Length = 1475

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = +1

Query: 838  PPPPXFXXGPXP-LFFXXXGGGGGG 909
            PPPP    GP P   +    GGGGG
Sbjct: 1322 PPPPPMIRGPPPDQMYRDRSGGGGG 1346


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +1

Query: 766 PPPPXKXXXGPPXXXXGXFFXXFSPPPPXFXXGP 867
           PPPP      PP    G F     PPPP     P
Sbjct: 762 PPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +1

Query: 766 PPPPXKXXXGPPXXXXGXFFXXFSPPPPXFXXGP 867
           PPPP      PP    G F     PPPP     P
Sbjct: 762 PPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 795


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +1

Query: 766 PPPPXKXXXGPPXXXXGXFFXXFSPPPPXFXXGP 867
           PPPP      PP    G F     PPPP     P
Sbjct: 345 PPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAP 378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,414,135
Number of Sequences: 27780
Number of extensions: 228395
Number of successful extensions: 1808
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1429
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)