Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_F06
(893 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 32 0.13
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 31 0.29
SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces pom... 29 0.67
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ... 29 0.67
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 2.1
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 27 3.6
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 27 3.6
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom... 27 4.8
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 4.8
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 27 4.8
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc... 27 4.8
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 27 4.8
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 26 6.3
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 26 8.3
SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 8.3
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 31.9 bits (69), Expect = 0.13
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 2/117 (1%)
Frame = +1
Query: 283 NMGGNYERAHNMDSLAQRHLSGAISQVEGELGEEGSKTRTGSVYTAANSAGFYGSGNYDL 462
N N N +S+ + LS LG G+ + +++G Y + N
Sbjct: 528 NTSNNNSNTSNNESMVSK-LSSLSGMASSFLGSSGNNNNNNN-----SNSGNYNNNNSGN 581
Query: 463 SNLRGRNFQEGTYLDNAHSSLL--SNAQYSTQAINRNSHYSNSQFSNSNYRNSHRAS 627
+N + + Q + L SS L S+ + Q N N++ + +N NY N++ +S
Sbjct: 582 NNQQHQ--QSSSSLQGLASSFLNSSSGNSNKQNYNNNNNQNYGNNNNQNYNNNNNSS 636
Score = 26.6 bits (56), Expect = 4.8
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 502 LDNAHSSLLSNAQYSTQAINRNS-HYSNSQFSNSNYRNSHRASPSQSQHISDLQASDGS 675
L SS L ++ + N NS +Y+N+ N+N ++ +S Q S L +S G+
Sbjct: 549 LSGMASSFLGSSGNNNNNNNSNSGNYNNNNSGNNNQQHQQSSSSLQGLASSFLNSSSGN 607
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 30.7 bits (66), Expect = 0.29
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +2
Query: 158 LPHYRHWLW--PNLNFIKKKKTFTILEVRRTKVASLDFMVRKEETWGVIMNVLTTWIHLL 331
LP + W P+ + KK + + + + V +++WG IM V+ T ++ L
Sbjct: 827 LPFFALWFENIPSFTRVHDKKLSLVAILSVISLGAQQVAVAIQDSWGNIMKVMITLLNTL 886
Query: 332 KDI*AARSHKLKE 370
+ AAR+ KE
Sbjct: 887 PEALAARAELEKE 899
>SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 132
Score = 29.5 bits (63), Expect = 0.67
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 511 AHSSLLSNAQYSTQAINRNSHYSNSQFSNSNYRNSHRASPS 633
AH+ + ++ Q S+Q+ N+N SN+Q ++N S + S S
Sbjct: 69 AHARVNNDLQMSSQSANKNDDNSNNQNPSNNKEMSDKESDS 109
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 565 NSHYSNSQFSNSNYRNSHRASPSQSQHISDLQASDGS 675
N +SQ +N N NS+ +PS ++ +SD ++ +
Sbjct: 75 NDLQMSSQSANKNDDNSNNQNPSNNKEMSDKESDSAT 111
>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 29.5 bits (63), Expect = 0.67
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +1
Query: 367 GELGEEGSKTRT-GSVYTAANSAGFYGSGNYDLSNLRGRNFQEGTYLDNAHSSLLSNAQ 540
G G + + +T G+V +A S YG G Y N + T NA ++ NAQ
Sbjct: 221 GSYGNDNTANKTRGAVSSAGYSGEGYGKGTYATDTTAEANRRAATGTRNARTTAQRNAQ 279
>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 419
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 559 NRNSHYSNSQFSN-SNYRNSHRASPSQSQHISDLQA 663
NR S + NSQ+S +N++N+ SP+ S + LQA
Sbjct: 234 NRVSSFQNSQYSTLNNFQNNSNQSPN-SNDLQPLQA 268
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 27.1 bits (57), Expect = 3.6
Identities = 29/128 (22%), Positives = 56/128 (43%), Gaps = 4/128 (3%)
Frame = +1
Query: 274 QRGNM---GGNYERAHNMDSLAQRHLSGAISQVEGELGEEGSK-TRTGSVYTAANSAGFY 441
QRG+ GGN +R+ N++ +R + + +L ++ S+ + T ++ +N +
Sbjct: 412 QRGSYNREGGNMDRSRNVNYQPKRQQN--FKPLTSDLPQKNSEFSETNAMNQTSNHSHAD 469
Query: 442 GSGNYDLSNLRGRNFQEGTYLDNAHSSLLSNAQYSTQAINRNSHYSNSQFSNSNYRNSHR 621
G Y R + + + D S+ Q A N +S Y N+ + R S
Sbjct: 470 GQRYYRPEQDRSQRLRNPS--DYGRQGRQSS-QSQQPAWNVSSRYQNNSKVQTTSRASEN 526
Query: 622 ASPSQSQH 645
A +++QH
Sbjct: 527 ADTNKTQH 534
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 27.1 bits (57), Expect = 3.6
Identities = 26/108 (24%), Positives = 47/108 (43%)
Frame = +1
Query: 370 ELGEEGSKTRTGSVYTAANSAGFYGSGNYDLSNLRGRNFQEGTYLDNAHSSLLSNAQYST 549
++GE K R S + N + S + D+ LRG + LD + + Y +
Sbjct: 679 QVGESLKKWRLTSRFCLGNLHDWNTSSSVDVGELRGIDKLALVQLDKFQTEI--RELYES 736
Query: 550 QAINRNSHYSNSQFSNSNYRNSHRASPSQSQHISDLQASDGSQGLSTI 693
+IN+ H+ N F NS + +S + + +DL S + + T+
Sbjct: 737 YSINKVVHHLN-YFMNS-FLSSTYFDAVKDRLYADLPNSVSRRSVQTV 782
>SPAC6F6.12 |||autophagy associated protein
Atg24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 401
Score = 26.6 bits (56), Expect = 4.8
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 308 LTTWIHLLKDI*AARSHKLKESWARRDQKPERV 406
LT + +KD+ + +H LKE RRDQK + V
Sbjct: 253 LTLLLDTIKDV-ESYAHSLKELLKRRDQKQQDV 284
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 26.6 bits (56), Expect = 4.8
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = +1
Query: 463 SNLRGRNFQEGTYLDNAHSSLLSNAQYSTQAINRNSHYSNSQFSNSNYR-NSHRASPSQS 639
SN +F G N S ++N S N N+ S+ Q N N N H +S S
Sbjct: 380 SNTFSPDFPYGNSYGNGSSHFIANYGGSVHHSNENTMQSDLQHQNGNNAVNHHHSSRSFG 439
Query: 640 QHISDLQASD---GSQG 681
++ +A D GS+G
Sbjct: 440 GNV-PFRAGDWKCGSEG 455
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 26.6 bits (56), Expect = 4.8
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +1
Query: 460 LSNLRGRNFQEGTYLDNAHSSLLSNAQYSTQAINRNSHYSNSQFSNSNYRNSHRASPSQS 639
LSNL+ R G YLD++ + L + S + + + S +N + +PS++
Sbjct: 216 LSNLKSRLDLAGEYLDDSIMNDLGDNVGSNSKGSPTTSIPEHKTSINNNKPEDTPTPSEN 275
Query: 640 QHISDLQ 660
H+S Q
Sbjct: 276 VHLSARQ 282
>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 26.6 bits (56), Expect = 4.8
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +1
Query: 457 DLSNLRGRNFQEGTYLDNAHSSLLSNAQYSTQAINRNSHYSNSQFSNSNYRN 612
+++N+ RNFQ G + + SSL +N Q A N ++ +N N+N N
Sbjct: 264 NIANM-ARNFQSGGGMPDL-SSLANNPQLQNLARNFMNNNNNGNTDNNNQGN 313
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +1
Query: 505 DNAHSSLLSNAQYSTQAINRNSHYSN--SQFSNSNYRNSHRASPSQSQH 645
DN + + S + ++ H+ + S F N +S +SPS+S+H
Sbjct: 327 DNWDNEFQGTLKISDDVLKKSEHFMDFCSNFKGKNNSSSITSSPSKSRH 375
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 26.2 bits (55), Expect = 6.3
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +1
Query: 517 SSLLSNAQYSTQAINRNSHYSNSQFSNSNYRNSHRASPSQSQHISDLQASDGS 675
SSLLS S + S S Q ++++ +S SPS S S + + GS
Sbjct: 337 SSLLSLLTQSFSTVRSTSSSSTDQLTSASPISSSVISPSVSSPTSSILTNSGS 389
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 25.8 bits (54), Expect = 8.3
Identities = 21/77 (27%), Positives = 38/77 (49%)
Frame = +2
Query: 92 ILSFISTLKCLDKSKP*DDYFCLPHYRHWLWPNLNFIKKKKTFTILEVRRTKVASLDFMV 271
+ + ++ L+C+ +F H +L+P LN + K K F L R T + + +V
Sbjct: 82 VCNALALLQCIASHPETRIHFLNAHITLFLYPFLNTLSKSKPFEYL--RLTSLGVIGALV 139
Query: 272 RKEETWGVIMNVLTTWI 322
K ++ VI +L+T I
Sbjct: 140 -KNDSPEVINFLLSTEI 155
>SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 98
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -2
Query: 325 VNPCCEHVHNYPPCFLFAHHKIQTCYLRPTNF*NSESLLFLYKV 194
+NPC N+ + KI+ L T+F ++E++ FLY +
Sbjct: 49 LNPC-----NFSKSLFWLRKKIKNSVLLKTSFDSNETIFFLYSL 87
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,257,394
Number of Sequences: 5004
Number of extensions: 66348
Number of successful extensions: 232
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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