Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_F06
         (893 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0471 + 3629158-3629185,3630027-3630058,3630272-3630344,363...    34   0.13 
05_07_0257 + 28719980-28720220,28721412-28721455,28722521-287225...    33   0.23 
02_03_0218 + 16526082-16526375,16526606-16526725,16528078-165282...    29   6.6  
07_01_0179 - 1259353-1259466,1260818-1261150,1261523-1261681,126...    28   8.7  
03_01_0452 - 3465140-3466404,3466481-3467056,3467150-3467495           28   8.7  

>03_01_0471 +
           3629158-3629185,3630027-3630058,3630272-3630344,
           3630745-3630969,3631319-3631789,3632286-3633118
          Length = 553

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 13/136 (9%)
 Frame = +1

Query: 325 LAQRHLSGAISQVEGELGEEGSKTRTGSVYTAANSAGFYGSGNYDLSNLRGRNFQEGTYL 504
           +++R  S +IS++    G   S     S +T + +     S N DLSN+  R     ++L
Sbjct: 342 ISRRPSSQSISRIYAASGTPNSPNPIRS-FTNSTAMSISRS-NVDLSNMSSR--PRASHL 397

Query: 505 DNAHS---SLLS---NAQYSTQAINRNS------HYSNSQFSNSNYRNSHRASPSQSQHI 648
            +AHS   S LS   N +Y++  ++ +       H S+S  SNS Y +S     S SQH 
Sbjct: 398 ASAHSLVGSHLSPPINIRYASPHMSHSGYASPSPHVSSSYVSNSGYGSSSYYLGSSSQHR 457

Query: 649 SDL-QASDGSQGLSTI 693
           S L +  +    LST+
Sbjct: 458 SYLRRCGESGPSLSTM 473


>05_07_0257 +
           28719980-28720220,28721412-28721455,28722521-28722590,
           28722693-28722816,28723420-28724060,28725100-28725364,
           28725434-28725713,28726042-28726209,28726867-28727358,
           28727432-28727689
          Length = 860

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 28/120 (23%), Positives = 47/120 (39%)
 Frame = +1

Query: 310 HNMDSLAQRHLSGAISQVEGELGEEGSKTRTGSVYTAANSAGFYGSGNYDLSNLRGRNFQ 489
           +N DS  + ++S    Q E  +  E  K+++     A          N D ++L   +F 
Sbjct: 371 NNRDS--EGNMSATDKQFEQLILHEEKKSKSSEDNPAVIIPDHLQVSNADCAHLTFGSFV 428

Query: 490 EGTYLDNAHSSLLSNAQYSTQAINRNSHYSNSQFSNSNYRNSHRASPSQSQHISDLQASD 669
            GT LD   S   +N      A++ N     S      Y N    +P+  +H++    SD
Sbjct: 429 SGT-LDAPVSLKTANGDEEVAAVSDNHSIDQSDVRIHEYENKDTVAPAADEHVASSTKSD 487


>02_03_0218 +
           16526082-16526375,16526606-16526725,16528078-16528238,
           16528601-16528634,16529296-16529398,16529784-16529963,
           16530726-16530742
          Length = 302

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
 Frame = +1

Query: 334 RHLSGAISQVEGELGEEGSKTRT--GSVYTAANSAGFYGSGNYDLSNLRGRNFQEGTYLD 507
           R  + A   +E   G+  S+ R    S Y   N    +GS + D     GR+F+      
Sbjct: 235 RERAFAPMNMENNFGQHDSRFRNRHDSNYAPRNMENKFGSNDSDFGTQSGRSFRHDPSFR 294

Query: 508 NAHSS 522
           N H S
Sbjct: 295 NQHGS 299


>07_01_0179 -
           1259353-1259466,1260818-1261150,1261523-1261681,
           1261914-1261946
          Length = 212

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 739 AFGINFCGCSLTSVIKLLITLVSHLKLVGHLYVVTEMEMHDDYFD 605
           AFGI+ C C LT V   + +LV   +   H Y+   +   DD  D
Sbjct: 19  AFGIDLCICMLTHVFLSVFSLVKR-ETEQHAYMGVMLRNEDDGSD 62


>03_01_0452 - 3465140-3466404,3466481-3467056,3467150-3467495
          Length = 728

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = +1

Query: 259 GFYGAQRGNMGGNYERAHNMDSLAQRHLSGAISQVEGELGEEGSKTRTGS 408
           G     R N GG Y+   NM  L   H SG    V  +  +E     +GS
Sbjct: 605 GMSSTDRHNFGGTYDSLQNMSVLHPEHWSG--EPVSSQQIDENQSVDSGS 652


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,761,777
Number of Sequences: 37544
Number of extensions: 420808
Number of successful extensions: 1108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)