Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_F05
         (889 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   1.8  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   5.6  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    21   9.8  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   9.8  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   9.8  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 188 EHKKTAPKHEINMIYERALKELPGSFKLWYNYLKLRRKQIRGR 316
           E +K++ KH   ++ ER+   L   F+L  N L        GR
Sbjct: 129 EEEKSSTKHYAALLTERSSLVLRNDFRLMSNNLNKNNVVATGR 171


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 773 LNVDAIIRGGLRRYTD 820
           LNVDA IRG + R  D
Sbjct: 241 LNVDASIRGWIERGAD 256


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 171 IGLGTLNTRKLHPNMKLI*YMNEL 242
           +GL  LN    +   K+I YMN L
Sbjct: 169 VGLADLNQGSDYVRSKIIEYMNHL 192


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 171 IGLGTLNTRKLHPNMKLI*YMNEL 242
           +GL  LN    +   K+I YMN L
Sbjct: 170 VGLADLNQGSDYVRSKIIEYMNHL 193


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 171 IGLGTLNTRKLHPNMKLI*YMNEL 242
           +GL  LN    +   K+I YMN L
Sbjct: 170 VGLADLNQGSDYVRSKIIEYMNHL 193


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,604
Number of Sequences: 336
Number of extensions: 3543
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24617054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)