Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_F05
(889 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 179 4e-46
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 45 1e-05
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 37 0.004
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 31 0.22
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 30 0.51
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 29 0.88
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/... 29 0.88
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 29 1.2
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy... 29 1.2
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 27 2.7
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 27 3.6
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 27 4.7
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 27 4.7
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 6.2
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 26 6.2
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 26 8.2
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 8.2
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 179 bits (436), Expect = 4e-46
Identities = 86/228 (37%), Positives = 136/228 (59%), Gaps = 2/228 (0%)
Frame = +2
Query: 158 FLVKHWLRYIEHKKTAPKHEINMIYERALKELPGSFKLWYNYLKLRRKQIR--GRCIADP 331
+ +K WLRYI+ + + + +++ERA ELPGS+K+W +YL+LR +
Sbjct: 30 YSLKSWLRYIKTHEGSTLEKRVLLFERACSELPGSYKIWKSYLELRVAHVEHLNPYFHAE 89
Query: 332 CYEDVNNCFERSLVFMHKMPRIWMDYCSFLTDQYKITTTRKAFDSALRALPITQHHRIWP 511
+ VN+CFERSL+ +HKMP IW Y FL Q +T R F+SALRALP+TQH IW
Sbjct: 90 AFASVNDCFERSLILLHKMPVIWKLYLQFLMKQPNVTKIRCTFNSALRALPVTQHDDIWD 149
Query: 512 LYLNFLKKHNIPETAVRVFRRYLKLCPEDTEEYIDYLTSIDKLDEAAVKLAQLVNNENFQ 691
++ + + + V+RRY+++ P E YI+ L + +EAA + ++N F
Sbjct: 150 MFTKYAEDIG-GLFCIHVYRRYIQVEPRAIENYIEILCKLGLWNEAARQYEDILNRPVFL 208
Query: 692 SKHGKSNHQLWNELCELISKNPDQIHSLNVDAIIRGGLRRYTDQLGHL 835
S KSN+Q+W E EL+ ++PD +++V+ + R G++R++DQ G L
Sbjct: 209 SAKRKSNYQIWLEFSELVVQHPDHTQNIDVEKVFRAGIKRFSDQAGKL 256
Score = 32.7 bits (71), Expect = 0.072
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Frame = +2
Query: 356 FERSL---VFMHKMPRIWMDYCSFLTDQYKITTTRKAFDSALRALPITQHHRIWPLYLNF 526
F+ SL V +HK +IWM Y I TTRK +D T ++ Y N
Sbjct: 466 FDESLSPQVRLHKSSKIWMYYLDLEESVGTIETTRKLYDRVFELKIATP--QVVVNYANL 523
Query: 527 LKKHNIPETAVRVFRRYLKL--CPEDTEEYIDYLTSIDK 637
L+++ E + +++ R + L P E + YLT K
Sbjct: 524 LEENAYFEDSFKIYERGVALFSYPVAFELWNLYLTKFVK 562
Score = 26.6 bits (56), Expect = 4.7
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 3/102 (2%)
Frame = +2
Query: 338 EDVNNCFERSLVFMHKMPRIWMDYCSFLTDQYKITTTRKAFDSALRALPITQHHRIWPLY 517
E ++R P++ ++Y + L + + K ++ + +W LY
Sbjct: 497 ETTRKLYDRVFELKIATPQVVVNYANLLEENAYFEDSFKIYERGVALFSYPVAFELWNLY 556
Query: 518 L-NFLKKH--NIPETAVRVFRRYLKLCPEDTEEYIDYLTSID 634
L F+K++ E +F + L+ CP + + I YL D
Sbjct: 557 LTKFVKRYQGTHMERTRDLFEQALEGCPPEFSKSI-YLLYAD 597
>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 674
Score = 45.2 bits (102), Expect = 1e-05
Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 9/151 (5%)
Frame = +2
Query: 230 YERALKELPGSFKLWYNYLKLRRKQIRGRCIADPCYE----DVNNCFERSLVFMHKMPRI 397
YE+ LK+ P + W + LKL I + YE V E++ + I
Sbjct: 308 YEKLLKDSPYDYDTWLDLLKLEESAGDINTIRE-TYEKAIAKVPEVVEKNA--WRRYVYI 364
Query: 398 WMDYCSF-LTDQYKITTTRKAFDSALRALPITQ--HHRIWPLYLNFLKKHNIPETAVRVF 568
W++YC F D + RK + AL+ +P + ++W +Y F + + A +
Sbjct: 365 WLNYCLFEEIDVKDVDRARKVYQEALKLIPHKKFTFAKLWLMYAMFELRQRKIDVARKTL 424
Query: 569 RRYLKLCPEDT--EEYIDYLTSIDKLDEAAV 655
R L +CP+ YI++ +I + D +
Sbjct: 425 GRALGMCPKPKLFRGYIEFEDAIKQFDRCRI 455
Score = 42.3 bits (95), Expect = 9e-05
Identities = 32/145 (22%), Positives = 64/145 (44%), Gaps = 1/145 (0%)
Frame = +2
Query: 170 HWLRYIEHKKTAPKH-EINMIYERALKELPGSFKLWYNYLKLRRKQIRGRCIADPCYEDV 346
HW+RY + + + ++ERAL LW Y++ +++ R I
Sbjct: 72 HWMRYGQWELDQKEFARARSVFERALDVDSTYIPLWLKYIEC---EMKNRNI-----NHA 123
Query: 347 NNCFERSLVFMHKMPRIWMDYCSFLTDQYKITTTRKAFDSALRALPITQHHRIWPLYLNF 526
N F+R++ + ++ ++W Y IT R+ F+ L+ P W Y+
Sbjct: 124 RNLFDRAVTQLPRVDKLWYKYVYMEEMLGNITGCRQVFERWLKWEP---DENCWMSYIRM 180
Query: 527 LKKHNIPETAVRVFRRYLKLCPEDT 601
++++ E A ++ R++ + PE T
Sbjct: 181 ERRYHENERARGIYERFVVVHPEVT 205
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 36.7 bits (81), Expect = 0.004
Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Frame = +2
Query: 383 KMPRIWMDYCSFLTDQYKITTTRKAFDSALRALPITQHHRIWPLYLNFLKKHNIPETAVR 562
++P +W+ Y +FL + K + +L++LP ++H I + K+ PE
Sbjct: 1544 QVPSVWIQYATFLLNNDKAEKAHGLLERSLQSLPKSEHVGIIEKFAILEFKNGDPERGRT 1603
Query: 563 VFRRYLKLCPEDTEEYIDYLTSIDKLDEAAV--KLAQLVNNENFQSKHGKSNHQLW 724
+F L P+ + + + K D+ ++ +L Q + N +K K + W
Sbjct: 1604 IFEGLLSSYPKRLDLWNVLIDMEMKQDDPSIVRRLFQRLLALNLSTKKAKFAFKKW 1659
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 31.1 bits (67), Expect = 0.22
Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 2/142 (1%)
Frame = +2
Query: 218 INMIYERALKELPGSFKLWYNYLKLRRKQIRGRCIADPCYEDVNNCFERSLVFMHKMPRI 397
+ +Y+R L + P F W Y + G E + +ER + + +
Sbjct: 57 LRSVYDRFLGKYPLLFGYWKKYADFEFF-VAGA-------EASEHIYERGIAGIPHSVDL 108
Query: 398 WMDYCSF-LTDQYKITTTRKAFDSALRALPIT-QHHRIWPLYLNFLKKHNIPETAVRVFR 571
W +YC+F + R+ F + + H W YL F ++ P+ ++
Sbjct: 109 WTNYCAFKMETNGDANEVRELFMQGANMVGLDFLSHPFWDKYLEFEERQERPDNVFQLLE 168
Query: 572 RYLKLCPEDTEEYIDYLTSIDK 637
R + + Y + + +
Sbjct: 169 RLIHIPLHQYARYFERFVQVSQ 190
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 161 LVKHWLRYIEHKKTAPKHEINM-IYERALKELPGSFKLWYNY 283
L +W +Y + + E + IYER + +P S LW NY
Sbjct: 71 LFGYWKKYADFEFFVAGAEASEHIYERGIAGIPHSVDLWTNY 112
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 29.9 bits (64), Expect = 0.51
Identities = 24/117 (20%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Frame = +2
Query: 194 KKTAPKHEINMIYERALKELPGSFKLWYNYLKLRRKQIRGRCIADPCYEDVNNCFERSLV 373
+K P + + ++ ++E P WY ++ +G+ +E++ +E+ L
Sbjct: 49 RKRLPNDLVGQLRDK-IQENPNDISSWYALVE--EYGSKGK------HEELRETYEQMLR 99
Query: 374 FMHKMPRIWMDYCSFLTDQYKITTTRKAFDSAL-RALPITQHHRIWPLYLNFLKKHN 541
+PR+W+DY S F L + L + +W LYL+++++ N
Sbjct: 100 PFPYVPRVWVDYISSELAFNDFHAVELLFSRCLVKVLSVD----LWTLYLSYIRRIN 152
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 164 VKHWLRYIEHKKTAPKHE-INMIYERALKELPGSFKLWYNYL 286
+ W +E + KHE + YE+ L+ P ++W +Y+
Sbjct: 71 ISSWYALVEEYGSKGKHEELRETYEQMLRPFPYVPRVWVDYI 112
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 29.1 bits (62), Expect = 0.88
Identities = 22/85 (25%), Positives = 43/85 (50%)
Frame = +2
Query: 602 EEYIDYLTSIDKLDEAAVKLAQLVNNENFQSKHGKSNHQLWNELCELISKNPDQIHSLNV 781
EE+ + TS +KL+E + +A + + E +G++ +L + +L +N D + L
Sbjct: 406 EEHKHHSTS-EKLEELSKYVASIQDKER---NNGQNALELQARIQQLERRNEDMYNKLLA 461
Query: 782 DAIIRGGLRRYTDQLGHLLELSCRL 856
+ IIR L +L + + CR+
Sbjct: 462 EEIIRRKLHNDIQELKGNIRVFCRV 486
>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
reductase/acetylglutamate kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 885
Score = 29.1 bits (62), Expect = 0.88
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 387 ILCINTKDLSKQLFTSS*HGSAIQRPLI 304
+ I+TKDL K+LFT S G+ I R +
Sbjct: 320 VAIISTKDLQKELFTESGAGTLISRGFV 347
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 28.7 bits (61), Expect = 1.2
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +2
Query: 578 LKLCPEDTEEYIDYLTSIDKLDEAAV-KLAQLVNNENFQSKHGKSNHQLWNELCELISKN 754
L+L PED EEY + DKL+ + KL L N S+ S + +L I
Sbjct: 373 LRLLPEDKEEYEGLRSEADKLNSNLLFKLQTLNRNIKVTSQSKDSLTSIVGDLESKIKSL 432
Query: 755 PDQIHSLNVD 784
+ + SL+ +
Sbjct: 433 HESVSSLDTE 442
>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +2
Query: 611 IDYLTSIDKLDEAAVKLAQLVNNENFQSKHGKSNHQLWNELCELISKNPDQIHSLNV 781
I L I+ L+++A L + E +KH K +LW + ++I + P Q+H NV
Sbjct: 409 ISTLNLINILEDSAAASRCLESIEPLCNKHEKKIFKLWLLVLKVIREGP-QVHQSNV 464
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 362 RSLVFMHKMPRIWMDYCSFLTDQYKITTTRKAF 460
R + + + W DY SFLT +K+ T +F
Sbjct: 21 RKCIALFQTVEQWPDYISFLTKLHKVLQTHSSF 53
>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/63 (25%), Positives = 33/63 (52%)
Frame = +2
Query: 596 DTEEYIDYLTSIDKLDEAAVKLAQLVNNENFQSKHGKSNHQLWNELCELISKNPDQIHSL 775
D E++D + SI+ + +L QL+ + + G+ Q++ L EL SK+ ++ L
Sbjct: 4 DVLEFVDKIASIESAGDTLDRLPQLI---SLACEKGQET-QVYERLNELASKSAIRVEQL 59
Query: 776 NVD 784
+ +
Sbjct: 60 SAE 62
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/72 (18%), Positives = 35/72 (48%)
Frame = +2
Query: 344 VNNCFERSLVFMHKMPRIWMDYCSFLTDQYKITTTRKAFDSALRALPITQHHRIWPLYLN 523
+ +ER++V +P +W+ Y ++L+ + ++++ + + + RIW + L
Sbjct: 291 ITTLYERAIVLYPLIPELWLQYTAWLS-KVDFSSSQASSVAERATRNCSWIGRIWSIKLT 349
Query: 524 FLKKHNIPETAV 559
++ +AV
Sbjct: 350 YMTLSGASTSAV 361
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +2
Query: 533 KHNIPETAVRVFRRYLKLCPEDTEEYIDYLTSIDKLDEAAVKLAQLVNNE 682
+H+ TAVR LC + T + I + + +D +L+ ++N+E
Sbjct: 261 RHSFLLTAVRQTYNIFLLCKDSTTQAIAQVALLQMVDSVFQRLSTVLNHE 310
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +2
Query: 614 DYLTSIDKLDEAAVKLAQLVNNENFQSKHGKSNHQLWNELCELISKNPDQIHSL 775
DYL + +K D+A V +A+L + + +++W + +LI+ ++ L
Sbjct: 943 DYLNAKEKHDQAKVLVARLTQLLQALEETLRRRNEMWTKFRKLITLRTKELFEL 996
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 182 YIEHKKTAPKHEINMIYERALKELPGSFKLWYNYLKLRRK 301
++E + P E +I A+K+LP S LW KL +
Sbjct: 315 WLEAIRLHPAAEAKVIIANAVKKLPKSVTLWLEAEKLENQ 354
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 25.8 bits (54), Expect = 8.2
Identities = 20/94 (21%), Positives = 39/94 (41%)
Frame = +2
Query: 464 SALRALPITQHHRIWPLYLNFLKKHNIPETAVRVFRRYLKLCPEDTEEYIDYLTSIDKLD 643
SA+ ++ + QH +P ++ H++P+ F + + P EY D +
Sbjct: 569 SAMSSM-LVQHVHSFPPQEVIMQIHSVPQFLYEYFCEFELMYPNSLMEYGDLKLDVFAEF 627
Query: 644 EAAVKLAQLVNNENFQSKHGKSNHQLWNELCELI 745
+ LVN + + H + +N L EL+
Sbjct: 628 DRKRFFDFLVNTQCYSLDHAAQICKQYNYLDELV 661
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 8.2
Identities = 24/83 (28%), Positives = 40/83 (48%)
Frame = +2
Query: 518 LNFLKKHNIPETAVRVFRRYLKLCPEDTEEYIDYLTSIDKLDEAAVKLAQLVNNENFQSK 697
LN KKH + E+ + + L+ ++E L+++ EAAV NNE +SK
Sbjct: 521 LNEKKKHEVYESQLNELKGELQTEISNSEHLSSQLSTLAAEKEAAV----ATNNELSESK 576
Query: 698 HGKSNHQLWNELCELISKNPDQI 766
+ S L N E ++K+ Q+
Sbjct: 577 N--SLQTLCNAFQEKLAKSVMQL 597
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,153,283
Number of Sequences: 5004
Number of extensions: 62827
Number of successful extensions: 179
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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