Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_F04
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch...    26   6.2  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    26   8.2  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   8.2  

>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 274

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 438 SSEHSMSQDQGKIQHQVDEE 497
           S EH+ S D G  QH +D+E
Sbjct: 46  SKEHNSSPDDGPWQHDLDQE 65


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 440 GICIRSPSLGHYHLELKEYHLE 375
           GI +R  ++G Y+LEL ++H E
Sbjct: 408 GIDLRLQNVGKYNLELMKWHFE 429


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 221  STLTRKTTNALSSQSVGSGGSAKRKTALNKNQIPKT 328
            STL    +++  S S+G G S    + +  N++P T
Sbjct: 3649 STLDYSVSSSSLSSSIGVGSSFSSNSKVTSNKVPST 3684


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,699,186
Number of Sequences: 5004
Number of extensions: 46338
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)