Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_F04
         (882 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003148-6|AAB54210.2|  306|Caenorhabditis elegans Cathepsin z p...    31   1.4  
U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z92773-4|CAB07130.2|  584|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z81114-8|CAB97236.1|  584|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>AF003148-6|AAB54210.2|  306|Caenorhabditis elegans Cathepsin z
           protein 1 protein.
          Length = 306

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 510 HWKGPLHQLGVEFFLGLDSWSAHWNMH 430
           H  G  H+ GVE+++G +SW   W  H
Sbjct: 248 HGWGVDHESGVEYWIGRNSWGEPWGEH 274


>U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical
           protein F53B3.2 protein.
          Length = 634

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 691 VXKIALFXXNLGXAIGFIWXPFIXLG 768
           V   AL   ++G A GFIW PF  LG
Sbjct: 4   VIPFALILTSVGFADGFIWLPFANLG 29


>Z92773-4|CAB07130.2|  584|Caenorhabditis elegans Hypothetical
           protein W08E3.2 protein.
          Length = 584

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 88  DRMSQIAEEQKLEESD-GLPPASSSSIAAQEKPREELP 198
           +R   + E +  EE D G+ PA    +  QEKPR++ P
Sbjct: 224 EREDTVDESKGEEEEDQGVRPAQKRQVKQQEKPRKQKP 261


>Z81114-8|CAB97236.1|  584|Caenorhabditis elegans Hypothetical
           protein W08E3.2 protein.
          Length = 584

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 88  DRMSQIAEEQKLEESD-GLPPASSSSIAAQEKPREELP 198
           +R   + E +  EE D G+ PA    +  QEKPR++ P
Sbjct: 224 EREDTVDESKGEEEEDQGVRPAQKRQVKQQEKPRKQKP 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,099,050
Number of Sequences: 27780
Number of extensions: 269178
Number of successful extensions: 733
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)