Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_F04
         (882 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.92 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   1.2  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   6.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   8.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   8.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -2

Query: 443 TGICIRSPSLGHYHLELKEYHLEWFSLVIDNRPHQNE 333
           TG+  +     H+HL+   +HL+  ++   +RP+Q +
Sbjct: 130 TGLIKQETLQRHHHLQNHHHHLQSTAVQDHHRPYQQQ 166


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = -1

Query: 525  LVQHPHWKGPLHQLGVEFFLGLDSWSAHWNMHQVAIPW 412
            LV  P W+  L+   VE  LG + WS      Q    W
Sbjct: 902  LVTFPVWQVTLNARLVELSLGSNPWSCRCKFLQELSSW 939


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -3

Query: 451 ECSLEYASGRHPLVIIILN*R 389
           +C++EY++G    + I+ N R
Sbjct: 190 DCTIEYSTGNFTCIQIVFNLR 210


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 101 CDILSAICNSIQKYCQ 54
           C+I+ AIC  +   CQ
Sbjct: 638 CNIMDAICTKLTADCQ 653


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = +2

Query: 155 VVALPRRKSRVKSYLHERFGLXSTLTRKTTNALSSQSVGSGG 280
           + +LP   + + S   E+  +    T+ TTN  + ++   GG
Sbjct: 856 ITSLPASSTSINSITVEKDVINDVKTQITTNTPAKKATNIGG 897


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,613
Number of Sequences: 438
Number of extensions: 3478
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)