Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_F03
(890 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 380 e-106
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 379 e-106
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 288 8e-79
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 246 2e-66
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 203 2e-53
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 75 1e-14
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 63 4e-11
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 58 2e-09
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce... 32 0.13
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 30 0.51
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 29 0.89
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 28 1.6
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc... 28 2.1
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 27 2.7
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy... 27 3.6
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 27 3.6
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 27 4.7
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo... 27 4.7
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 26 6.3
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 26 6.3
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch... 26 8.3
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 380 bits (935), Expect = e-106
Identities = 192/275 (69%), Positives = 212/275 (77%)
Frame = +1
Query: 46 SSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIV 225
SS QASIEIDSLFEGIDFYTSITRARFEEL ADLFR TMEPVE+ LRD+K+DKA +++IV
Sbjct: 274 SSAQASIEIDSLFEGIDFYTSITRARFEELCADLFRKTMEPVERVLRDSKVDKASVNEIV 333
Query: 226 LVGGSTRIPKVQKLLQDFFNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXX 405
LVGGSTRIP+VQKL+ DFFNGKE KSINPDE +L GD SE+ QD
Sbjct: 334 LVGGSTRIPRVQKLVSDFFNGKEPCKSINPDEAVAYGAAVQAAVLTGDTSEKTQDLLLLD 393
Query: 406 XXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVFEGERAMTKDNNL 585
GIETAGGVMT LIKRN YSDNQPGVLIQVFEGERA TKD NL
Sbjct: 394 VAPLSMGIETAGGVMTPLIKRNTTIPTKKSEIFSTYSDNQPGVLIQVFEGERARTKDCNL 453
Query: 586 LGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRLSKEEI 765
LGKFEL+GIPPAPRGVPQIEVTFD+DANGILNVSA+EK T K KITITNDKGRLSKEEI
Sbjct: 454 LGKFELSGIPPAPRGVPQIEVTFDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEI 513
Query: 766 ERMVNEAEKYRNEDDKQKETIQAXNALEFYXFSMK 870
+RMV EAEKY+ ED+ + IQA N LE Y +S++
Sbjct: 514 DRMVAEAEKYKAEDEAESGRIQAKNHLESYAYSLR 548
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 379 bits (933), Expect = e-106
Identities = 190/275 (69%), Positives = 214/275 (77%)
Frame = +1
Query: 46 SSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIV 225
SS QASIEIDSL+EGIDFYTSITRARFEEL ADLFR+TMEPVEK LRD+K+DK+ +++IV
Sbjct: 274 SSAQASIEIDSLYEGIDFYTSITRARFEELCADLFRNTMEPVEKVLRDSKIDKSSVNEIV 333
Query: 226 LVGGSTRIPKVQKLLQDFFNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXX 405
LVGGSTRIP++QKL+ DFFNGKE KSINPDE IL GD SE+ QD
Sbjct: 334 LVGGSTRIPRIQKLVSDFFNGKEPCKSINPDEAVAYGAAVQAAILVGDTSEKTQDLLLLD 393
Query: 406 XXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVFEGERAMTKDNNL 585
GIETAGGVMT LIKRN Y+DNQPGVLIQVFEGERA TKD NL
Sbjct: 394 VAPLSLGIETAGGVMTPLIKRNTTIPTKKSEVFSTYADNQPGVLIQVFEGERARTKDCNL 453
Query: 586 LGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRLSKEEI 765
LGKFEL+GIPPAPRGVPQIEVTFD+DANGILNVSA+EK T K KITITNDKGRLSKEEI
Sbjct: 454 LGKFELSGIPPAPRGVPQIEVTFDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEI 513
Query: 766 ERMVNEAEKYRNEDDKQKETIQAXNALEFYXFSMK 870
+RMV+EAEKY+ ED+ + IQA N LE Y +S++
Sbjct: 514 DRMVSEAEKYKAEDEAETSRIQAKNHLESYAYSLR 548
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||Manual
Length = 663
Score = 288 bits (706), Expect = 8e-79
Identities = 148/276 (53%), Positives = 188/276 (68%), Gaps = 1/276 (0%)
Frame = +1
Query: 46 SSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIV 225
S IEI+S F G DF +++RA+FEE+N DLF+ T++PVE+ L+D+ + K++I DIV
Sbjct: 306 SQKSVRIEIESFFNGQDFSETLSRAKFEEINMDLFKKTLKPVEQVLKDSNLKKSEIDDIV 365
Query: 226 LVGGSTRIPKVQKLLQDFFNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXX 405
LVGGSTRIPKVQ+LL+ FF GK+ +K INPDE +L G++ + +
Sbjct: 366 LVGGSTRIPKVQELLESFF-GKKASKGINPDEAVAYGAAVQAGVLSGEEGSD--NIVLLD 422
Query: 406 XXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVFEGERAMTKDNNL 585
GIET GGVMT LI RN DNQ VLIQV+EGER +TKDNNL
Sbjct: 423 VIPLTLGIETTGGVMTKLIGRNTPIPTRKSQIFSTAVDNQNTVLIQVYEGERTLTKDNNL 482
Query: 586 LGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKS-TNKENKITITNDKGRLSKEE 762
LGKF+L GIPPAPRGVPQIEVTF++DANG+L VSA++KS K K+ I NDKGRLS+E+
Sbjct: 483 LGKFDLRGIPPAPRGVPQIEVTFEVDANGVLTVSAVDKSGKGKPEKLVIKNDKGRLSEED 542
Query: 763 IERMVNEAEKYRNEDDKQKETIQAXNALEFYXFSMK 870
IERMV EAE++ ED KE I+A N LE Y +S+K
Sbjct: 543 IERMVKEAEEFAEEDKILKERIEARNTLENYAYSLK 578
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 246 bits (603), Expect = 2e-66
Identities = 122/278 (43%), Positives = 174/278 (62%), Gaps = 1/278 (0%)
Frame = +1
Query: 46 SSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIV 225
S TQ ++E+DSL GIDF +SITRARFE++NA F++T++PV K L+D+K+ KA +HDIV
Sbjct: 278 SVTQTTVEVDSLSNGIDFSSSITRARFEDINATTFKATIDPVAKVLKDSKVPKADVHDIV 337
Query: 226 LVGGSTRIPKVQKLLQDFFNGKELNKSINPDEXXXXXXXXXXXIL-HGDKSEEVQDXXXX 402
LVGGSTRIPKVQ+L+ DFF+G+ LNKSINPDE +L + S++ QD
Sbjct: 338 LVGGSTRIPKVQRLVSDFFDGRALNKSINPDEAVAYGAAVQAAVLTNKADSDKTQDLLLL 397
Query: 403 XXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVFEGERAMTKDNN 582
G+ G V + RN +DNQ V V++GER +N
Sbjct: 398 DVVPLSLGVAMEGNVFGVVCPRNTPIPTIKKRTFTTVADNQTTVTFPVYQGERVNCAENE 457
Query: 583 LLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRLSKEE 762
LG+F+LTGIPP PRG ++E TF++DANGIL V+A+EK+T + I ITN G LS +
Sbjct: 458 PLGEFQLTGIPPMPRGQAELEATFELDANGILKVTAVEKTTGRSAHIEITNSVGHLSSTK 517
Query: 763 IERMVNEAEKYRNEDDKQKETIQAXNALEFYXFSMKXT 876
I+ M+ A+K++ +D + ++A + LE Y +++ T
Sbjct: 518 IQEMIENADKFKQQDKDFAKKLEAKSQLESYISNIETT 555
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 203 bits (496), Expect = 2e-53
Identities = 107/247 (43%), Positives = 153/247 (61%)
Frame = +1
Query: 109 ITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNG 288
I+RA+FE+L L R T++P +++L+DA + ++I++++LVGG TR+P+V + ++ F
Sbjct: 343 ISRAQFEKLVDPLVRRTIDPCKRALKDANLQTSEINEVILVGGMTRMPRVVETVKSIFK- 401
Query: 289 KELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKR 468
+E KS+NPDE +L G V+D GIET GGV T LI R
Sbjct: 402 REPAKSVNPDEAVAIGAAIQGGVLSG----HVKDLVLLDVTPLSLGIETLGGVFTRLINR 457
Query: 469 NXXXXXXXXXXXXXYSDNQPGVLIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEV 648
N +D Q V I+VF+GER + +DN L+G F+LTGI PAP+G PQIEV
Sbjct: 458 NTTIPTRKSQVFSTAADGQTAVEIRVFQGERELVRDNKLIGNFQLTGIAPAPKGQPQIEV 517
Query: 649 TFDIDANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETI 828
+FD+DA+GI+NVSA +K+TNK++ IT+ G L+ EIE MV +AEKYR D +KE I
Sbjct: 518 SFDVDADGIINVSARDKATNKDSSITVAGSSG-LTDSEIEAMVADAEKYRASDMARKEAI 576
Query: 829 QAXNALE 849
+ N E
Sbjct: 577 ENGNRAE 583
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 75.4 bits (177), Expect = 1e-14
Identities = 33/92 (35%), Positives = 61/92 (66%)
Frame = +1
Query: 46 SSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIV 225
++++A I+ L +GIDF ITR+ E L D+ + +EP+ K+L+ A + ++I+ I+
Sbjct: 310 ANSEAIASIEELADGIDFRLKITRSVLESLCKDMEDAAVEPINKALKKANLTFSEINSII 369
Query: 226 LVGGSTRIPKVQKLLQDFFNGKELNKSINPDE 321
L GG++RIP +Q L D+ + +++K++N DE
Sbjct: 370 LFGGASRIPFIQSTLADYVSSDKISKNVNADE 401
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 63.3 bits (147), Expect = 4e-11
Identities = 34/96 (35%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Frame = +1
Query: 37 KILSST-QASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQI 213
K+LS+ A + ++ + ID + I R+ FEEL L P+EK+L A + K +
Sbjct: 278 KVLSANANAPLNVEMIMNDIDASSFIKRSDFEELIKPLLERLTPPIEKALELAGIKKEDL 337
Query: 214 HDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDE 321
+ I +VGG TR+P V++++ ++F GK L+ ++N DE
Sbjct: 338 YSIEMVGGCTRVPIVKEVIANYF-GKGLSFTLNQDE 372
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 57.6 bits (133), Expect = 2e-09
Identities = 28/91 (30%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Frame = +1
Query: 37 KILSS-TQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQI 213
++LS+ T AS +DSL +GIDF++SI R R++ + + V +++ A M+ I
Sbjct: 296 RVLSNGTTASAAVDSLADGIDFHSSINRLRYDLAASATLNRMADLVTEAVEKANMEPFDI 355
Query: 214 HDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 306
+++L GG++ PK+ L++ F + + +S
Sbjct: 356 SEVILAGGASNTPKLTSLMESIFPEQTIIRS 386
>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 190
Score = 31.9 bits (69), Expect = 0.13
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +1
Query: 661 DANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKE--TIQA 834
D LNVS + S +E +T ++ R+ +EE +RM ++ E K+K T+Q
Sbjct: 58 DLENTLNVSGTKDSNAEEQPAKLTKEEKRVEREEAKRMASKVLIKTIERTKRKRVTTVQG 117
Query: 835 XNA 843
+A
Sbjct: 118 LDA 120
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 29.9 bits (64), Expect = 0.51
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +1
Query: 4 VSXRLHYREFLKILSSTQASIE-----IDSLFEGIDFYTSITRARFEELNADLFRSTMEP 168
VS HY E +LSS + IE + SLFE I F+ S R +++ DL + ++
Sbjct: 287 VSREPHYLELKGVLSSNEEKIESINRDLSSLFEDIQFFISQRTKRQKDI-IDLKLACVKE 345
Query: 169 VEKSLRDAKMDKAQIHD 219
++ ++ + QI +
Sbjct: 346 KQQLIKTLESSLTQIRN 362
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 29.1 bits (62), Expect = 0.89
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 739 KGRLSKEEIERMVNEAEKYRNEDD 810
KG LSKEE+ER V +A K N D
Sbjct: 525 KGTLSKEELERRVYDAAKLANAYD 548
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 28.3 bits (60), Expect = 1.6
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = -3
Query: 402 KQQQILHLLR-LVTVQDSSLDSCTISYG-LVRVNRFV--ELLSIKEILQELLHLGDTSGA 235
K QQ+L LL LV D+ +DS + L ++ V S+ ELL LGD S
Sbjct: 932 KHQQLLDLLESLVGNNDNLIDSIKTPHTELQKITDHVLKGTTSLANHTNELLGLGDESLC 991
Query: 234 THQYNIVDLSLIHLGIT 184
+ I D SL+ L T
Sbjct: 992 NLETTIEDTSLVKLETT 1008
>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 676 LNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNED 807
L VS ++S K + + K EE+E VNE E++R D
Sbjct: 257 LCVSPEKRSLAKTREAVLAVTKWTTDDEELESFVNEEEEFRASD 300
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 669 RYPQRFRYREVHQQGEQDHHYQRQRSS-LQGRDRAY 773
R P R +YRE H + + H R QGR +Y
Sbjct: 320 RDPDRTKYREYHSERRKQHRTDRYSDDYYQGRSYSY 355
>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 27.1 bits (57), Expect = 3.6
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -1
Query: 686 ETLRIPLASMSKVTSI*GTPRGAGGIPVSSNLPSKLLSLVIARSPS 549
E L PLA MS TSI G G GG P + + + + +SPS
Sbjct: 76 EVLVDPLADMSAGTSIMGNNFGFGGFPRMNRRQRRRMG-IFDQSPS 120
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +1
Query: 682 VSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAXNA 843
V A+ KS +++ ++ G + EEI ++++ E E+D++ E N+
Sbjct: 597 VPALFKSIDQDESDILSERIGAPTAEEISQLLDSVETNEEENDEELEKAMGVNS 650
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 706 NKENKITITNDKGRLSKEEIERMVNEAE 789
NK+ K T D SKEE+E +V E E
Sbjct: 529 NKKGKHTQIEDPTAASKEELENLVREDE 556
>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 4.7
Identities = 24/95 (25%), Positives = 35/95 (36%)
Frame = -3
Query: 615 WDPGQLEFTEQVVIFGHSTLTLKYLDEYSGLVIRVGGECLSLFSGDGSVTLDECGHDTSS 436
WD G+ ++ I GHS +L L+ +G V+ S+ H
Sbjct: 61 WDNGKFSLVDRFTIDGHSPTSLCVLE--NGSVLTANYNSASISRSKAKDEKPHVWHHEGK 118
Query: 435 SLNTEGKGCYIKQQQILHLLRLVTVQDSSLDSCTI 331
SL+ E + Q H LV D LD +I
Sbjct: 119 SLHPERQTSSHPHQVTAH-KHLVCSVDLGLDRFSI 152
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 6.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 217 RGFEPYPSWHHGETSPLAP 161
+ +P P+ HG+TSPL+P
Sbjct: 420 KAIKPMPTSIHGQTSPLSP 438
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +2
Query: 470 TLPSPLNRLRHSPPTLITNPEYSSKYLR 553
T P RLRH+P I E KYLR
Sbjct: 43 TYGQPFKRLRHAPEKYIEFLELRLKYLR 70
>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 538
Score = 25.8 bits (54), Expect = 8.3
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 76 SLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVG 234
SL G+D+YT I E +A +S+ E +K D + D++ D + VG
Sbjct: 331 SLARGLDYYTGIIYEAVTEASAPKIKSSAE--KKKSADPEADRSN-DDSIGVG 380
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.133 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,388,013
Number of Sequences: 5004
Number of extensions: 67167
Number of successful extensions: 222
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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