Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_E24
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    27   3.6  
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    26   6.4  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   6.4  
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   8.4  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    26   8.4  

>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 374 SFSFFKFNNTLVYINGNWLCSVI*CTCI*FAPFLNSR 264
           SF F KF      ++G+W+ S+  C+   FA F+  R
Sbjct: 877 SFDFNKFTRQASKVHGSWISSL--CSSQAFAEFIGDR 911


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = +3

Query: 282 RKLNTSTSNDGTKPVPVDVYKRVVEFEEAEAHLRPADKDAAFFNKTCQDIRQ 437
           +K+ T T  D  KP+P D+ ++ + F   +   R    D    ++   D+R+
Sbjct: 709 KKVPTETGIDA-KPIPQDLLRKYIHFAREKVFPRLQQMDEEKISRLYSDMRR 759


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 609  RVDSTHLLLQNLLYEADHLNKEVTKCLQFKSKDEEIDLVPLEEFYKN 749
            R++   L    L  + DHLN+E+ +  +   K++E  ++ LEE   N
Sbjct: 1384 RLEDNQLATNKLKNQLDHLNQEI-RLKEDVLKEKESLIISLEESLSN 1429


>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 261

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +3

Query: 621 THLLLQNLLYEADHLNKEVTKCLQFKSKDEEIDL 722
           T L+LQNL  E ++  KE+ K      K+E+I+L
Sbjct: 18  TSLVLQNLKEETENQLKELEKKRSQLHKEEQINL 51


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -3

Query: 441 KVALCLGMFY*KRQHPYQLDADELQLLQIQQHACIHQRELALFRHLMYLYLICA 280
           KV    G+ Y +  HP+  + D    L++  +    Q+ L   + + Y+Y  CA
Sbjct: 76  KVIWRRGLAYLRLGHPHLANRDWEHSLELDPNNTYIQKSLHRLKEVYYIYRECA 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,990,814
Number of Sequences: 5004
Number of extensions: 52612
Number of successful extensions: 169
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)