Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_E24
         (902 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0863 + 32313890-32314132,32314227-32314517,32315157-323154...    61   1e-09
11_01_0780 - 6531579-6531608,6531732-6532064,6533219-6533325,653...    31   1.3  
06_03_1403 + 29923503-29923821,29924269-29924405,29924495-299246...    30   2.2  
06_03_0902 - 25806912-25807190,25807876-25808094,25809469-258097...    29   5.1  
12_01_0003 - 11806-12363,12659-13099                                   29   6.7  
11_01_0004 - 13421-13978,14274-14714                                   29   6.7  
07_03_1393 - 26245105-26246862                                         28   8.8  
02_05_0042 + 25351648-25351724,25351983-25352010,25352311-253523...    28   8.8  

>02_05_0863 +
           32313890-32314132,32314227-32314517,32315157-32315493,
           32315944-32316278,32316763-32317010,32317296-32317881,
           32317970-32318083,32318165-32318287,32318325-32318531
          Length = 827

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 32/63 (50%), Positives = 40/63 (63%)
 Frame = +3

Query: 603 KQRVDSTHLLLQNLLYEADHLNKEVTKCLQFKSKDEEIDLVPLEEFYKNAPPDIIRSEAT 782
           K  VDST L L NLLYE +H  K +  CL F++K   I+LVP EEF++ AP D IR +  
Sbjct: 101 KAPVDSTTLQLHNLLYEKNHYVKAIRACLDFQTKYPGIELVPTEEFHRAAPAD-IRDKTL 159

Query: 783 KAD 791
            AD
Sbjct: 160 AAD 162


>11_01_0780 - 6531579-6531608,6531732-6532064,6533219-6533325,
            6534267-6534316,6535110-6537065,6537458-6538209
          Length = 1075

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +3

Query: 273  KKRRKLNTSTSNDG-TKPVPVDVYKRVVEFEEAEAHLRPADKDAAFFNKTCQDIR 434
            ++RR +  S S D  ++P    V   V +F E ++ LRPAD   + FN+  ++ R
Sbjct: 983  RQRRSIEPSFSRDRLSQPRKHSVASAVPKFGEWDSPLRPADNYTSIFNRAREEKR 1037


>06_03_1403 +
           29923503-29923821,29924269-29924405,29924495-29924647,
           29924690-29925280,29925523-29925597,29925901-29926169,
           29927238-29927331
          Length = 545

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 19/60 (31%), Positives = 32/60 (53%)
 Frame = +3

Query: 567 RTRAGRDALHKEKQRVDSTHLLLQNLLYEADHLNKEVTKCLQFKSKDEEIDLVPLEEFYK 746
           R R     L KEK+  DS+ L +  L  +   + ++  K LQ+ ++ +E+D + LEE  K
Sbjct: 263 RKRIATKGLGKEKEGEDSSPLYVDELDEQPRPMGQKRAKKLQY-AQSKEVDHIDLEELDK 321


>06_03_0902 -
           25806912-25807190,25807876-25808094,25809469-25809711,
           25809810-25809974,25810141-25810721,25810940-25811048,
           25811158-25811250,25811474-25811535,25811895-25811967,
           25812879-25813007,25814107-25814229
          Length = 691

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 240 LNMGKEEVTAVKKRRKLNTSTSNDGTKPVPVDVYKRVVEFEEAEAHLRPADKDAA 404
           L+   E  +++   RK N      G +   +D YK VV  E+ +++   A KD+A
Sbjct: 229 LDQPNERASSMSNHRKKNHVFLEHGVRNGSIDTYKGVVSEEDHDSNPGHARKDSA 283


>12_01_0003 - 11806-12363,12659-13099
          Length = 332

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 322 GFVPSFDVLVFNLRRFLTAVTSSFPMFSFI 233
           G+VP  D LV +   F +  T+SFP   F+
Sbjct: 86  GYVPDLDALVRDCDSFFSTATASFPRRRFL 115


>11_01_0004 - 13421-13978,14274-14714
          Length = 332

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 322 GFVPSFDVLVFNLRRFLTAVTSSFPMFSFI 233
           G+VP  D LV +   F +  T+SFP   F+
Sbjct: 86  GYVPDLDALVRDCDSFFSTATASFPRRRFL 115


>07_03_1393 - 26245105-26246862
          Length = 585

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 291 NTSTSNDGTKPVPVDVYKRVVEFEEAEAHLRPADKDAAFFNKT--CQD 428
           N +T+  G +PVP D Y RV+   + E   R   +   F N T  C+D
Sbjct: 533 NETTTLSGGRPVPFDAYMRVI--VDTEVFYRAKTQVETFNNLTRDCKD 578


>02_05_0042 +
           25351648-25351724,25351983-25352010,25352311-25352373,
           25352880-25352945,25353029-25353076,25353338-25353379,
           25353499-25353714,25354066-25354188,25354352-25354564,
           25354930-25355016,25355259-25355507,25356386-25356507,
           25357135-25357225,25358467-25358882,25359489-25359609
          Length = 653

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +3

Query: 252 KEEVTAVKKRRKLNTSTSNDGTKPVPVDVYKRVVEFEEAEAH 377
           +EE+  ++    ++TSTS DG   V +  YK++    ++ A+
Sbjct: 137 QEEIANLRMASNVDTSTSGDGIHVVGLQSYKKIEALMQSTAN 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,881,018
Number of Sequences: 37544
Number of extensions: 289083
Number of successful extensions: 738
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)