Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_E24
         (902 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006733-1|AAF60487.1|  610|Caenorhabditis elegans Hypothetical ...    57   2e-08
Z32681-3|CAD88217.1|  685|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z32681-2|CAA83607.1|  687|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U58746-6|AAB00626.2|  378|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AF173373-1|AAD51973.1|  687|Caenorhabditis elegans transmembrane...    28   7.9  

>AC006733-1|AAF60487.1|  610|Caenorhabditis elegans Hypothetical
           protein Y32H12A.2 protein.
          Length = 610

 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 28/72 (38%), Positives = 45/72 (62%)
 Frame = +3

Query: 582 RDALHKEKQRVDSTHLLLQNLLYEADHLNKEVTKCLQFKSKDEEIDLVPLEEFYKNAPPD 761
           R  + +  + VD+  L LQN+  E  H+ KE+ +CL F + DEE++LVP E+F+  A  +
Sbjct: 110 RKEVAERMENVDAKLLQLQNVTSEVQHIQKEIDRCLDFSAGDEELELVPFEQFHTEA-SE 168

Query: 762 IIRSEATKADEH 797
           I+ +E T  +EH
Sbjct: 169 ILANE-TADNEH 179


>Z32681-3|CAD88217.1|  685|Caenorhabditis elegans Hypothetical
           protein F56F3.2b protein.
          Length = 685

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/65 (21%), Positives = 31/65 (47%)
 Frame = -2

Query: 337 TSTGTGFVPSFDVLVFNLRRFLTAVTSSFPMFSFIQVYQISSKSGTFKKITNLNRQLQPY 158
           T    G+V S +   + +  F+  ++S +P+ + +  Y +   S  F  +   +++L P 
Sbjct: 410 TCVDIGYVISMEAQYYAILIFVIFLSSKYPLLTQLFAYTVFGSSIIFSFVRAYSQELPPA 469

Query: 157 CLFTL 143
            + TL
Sbjct: 470 PMLTL 474


>Z32681-2|CAA83607.1|  687|Caenorhabditis elegans Hypothetical
           protein F56F3.2a protein.
          Length = 687

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/65 (21%), Positives = 31/65 (47%)
 Frame = -2

Query: 337 TSTGTGFVPSFDVLVFNLRRFLTAVTSSFPMFSFIQVYQISSKSGTFKKITNLNRQLQPY 158
           T    G+V S +   + +  F+  ++S +P+ + +  Y +   S  F  +   +++L P 
Sbjct: 410 TCVDIGYVISMEAQYYAILIFVIFLSSKYPLLTQLFAYTVFGSSIIFSFVRAYSQELPPA 469

Query: 157 CLFTL 143
            + TL
Sbjct: 470 PMLTL 474


>U58746-6|AAB00626.2|  378|Caenorhabditis elegans Hypothetical
           protein R05G6.9 protein.
          Length = 378

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 610 LCFSLWSASRPALVRTFSRRFNFFNATSSNEAST-LFAFIFSLASNVSLVFN 458
           +CF  WS      V      FN F+  ++N  +  LF  +F  AS+++L+ N
Sbjct: 65  MCFLGWSGDSCDSVANLMDPFNLFSNNNNNNNNNQLFPNLFPTASSLNLLNN 116


>AF173373-1|AAD51973.1|  687|Caenorhabditis elegans transmembrane
           protein NDG-4 protein.
          Length = 687

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/65 (21%), Positives = 31/65 (47%)
 Frame = -2

Query: 337 TSTGTGFVPSFDVLVFNLRRFLTAVTSSFPMFSFIQVYQISSKSGTFKKITNLNRQLQPY 158
           T    G+V S +   + +  F+  ++S +P+ + +  Y +   S  F  +   +++L P 
Sbjct: 410 TCVDIGYVISMEAQYYAILIFVIFLSSKYPLLTQLFAYTVFGSSIIFSFVRAYSQELPPA 469

Query: 157 CLFTL 143
            + TL
Sbjct: 470 PMLTL 474


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,272,721
Number of Sequences: 27780
Number of extensions: 286998
Number of successful extensions: 906
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)