Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_E24
         (902 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   1.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   2.2  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   6.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.7  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 431 YVLACFIEKGSILISWTQ 378
           + +ACF+ +G + ISW +
Sbjct: 376 HAVACFLTRGDLWISWEE 393


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = -2

Query: 445 LKSCLMSWHVLLKKXXXXXXXXXXXXXXSNSTTRLYTSTGTGFVPSFDVLVFN 287
           +K CL+SW+ L++                + TT L T T    +  +D LV+N
Sbjct: 426 VKDCLISWNPLMQPKQPIKLFEQWKSILESGTTTLQTRT----MHPYDHLVWN 474


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +3

Query: 612 VDSTHLLLQNLLYEADHLNKEVTKCLQFKSKDEEIDLVPLEEFYKNAPPDIIRSEATKAD 791
           VD   +   N ++E   L  E +      SKD+   LV L    ++   D++RS     D
Sbjct: 217 VDGFRIDAINHMFEDARLLDEPSANRTDLSKDDYESLVHLYTRDQSETYDVLRSWRNLMD 276

Query: 792 EH 797
           EH
Sbjct: 277 EH 278


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +3

Query: 672 EVTKCLQFKSKDEEIDLVPLE 734
           ++T+CLQ  S  + ++  P+E
Sbjct: 20  DLTQCLQESSTGQSVEFSPME 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,194
Number of Sequences: 438
Number of extensions: 3532
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)