Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_E23
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    29   0.87 
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    28   2.0  
SPAC5H10.09c |||3-methyl-2-oxobutanoatehydroxymethyltransferase|...    27   3.5  

>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 636 RFLFKQHIVFSIDESLTSFARPSNVMWVCGAK 541
           R ++K H++ +      S +  S ++WVCGAK
Sbjct: 172 RLVYKSHLLLNAYSPPKSASASSVIVWVCGAK 203


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 353 YYGSIVKDFYNFKPYSQISPRLHTI 279
           Y   +V+  +N  PYS+I  +LHTI
Sbjct: 512 YPNPVVESVFNDVPYSEIDSQLHTI 536


>SPAC5H10.09c
           |||3-methyl-2-
           oxobutanoatehydroxymethyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +3

Query: 12  YRSHYREPLRFLTLIEN---IEKECRMLIFLLIMPKKLIQ*IKKTLHTPPCI*VNTYTHT 182
           Y+   RE      LIEN   +EK    L+ L  +P+ L + I KT+ + P I +    HT
Sbjct: 153 YKIQGREQSAAARLIENAQQLEKFGAQLLVLECIPESLAEQITKTI-SIPTIGIGAGKHT 211

Query: 183 YTQCLLLN 206
             Q L+++
Sbjct: 212 DGQILVMH 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,308,274
Number of Sequences: 5004
Number of extensions: 66495
Number of successful extensions: 141
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)