Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_E22
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    28   1.5  
SPCC338.10c |cox5||cytochrome c oxidase subunit V|Schizosaccharo...    27   2.7  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    27   3.5  
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    26   8.1  

>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +3

Query: 87  IQAQVLPAKWPTI*CAGRSSMLSVFLSAPGLDPLETLNLPRLV 215
           + A VLP+  P +   GRSS LSV       D   TLN P  +
Sbjct: 430 LSATVLPSSTPILLPRGRSSTLSVNKKQFNADDGSTLNSPNSI 472


>SPCC338.10c |cox5||cytochrome c oxidase subunit
           V|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 174

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 523 SPIPDSLSEERQKAQLQRMLDLKVNPIDGLASK 621
           +P P +++ E Q+   + M + K+NPI G AS+
Sbjct: 121 APSPRTMTREWQEKSNEYMKENKINPISGEASE 153


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 672 LASAVSNLLPAVV-FIIPLGCKSIDGVHLKVQHSLELSL 559
           LA  V ++L  V   I+P G K I  +HLK   S+ + L
Sbjct: 213 LAENVESILQFVSKHIVPDGAKGIASIHLKTSQSIAIPL 251


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 278 GSQACLHSWAGR*NHSLPTHGHQSWQVQCFQW 183
           GSQ C  +W+   N  + THG    QV  +++
Sbjct: 335 GSQVCNMAWSKTSNEIVTTHGFAKNQVSLWKY 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,251,204
Number of Sequences: 5004
Number of extensions: 68792
Number of successful extensions: 159
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)