Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_E21
(897 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 126 3e-30
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 126 6e-30
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 29 0.90
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 28 2.1
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces... 27 4.8
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 26 6.3
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 6.3
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 26 8.4
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 26 8.4
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 26 8.4
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 126 bits (305), Expect = 3e-30
Identities = 65/117 (55%), Positives = 81/117 (69%)
Frame = +3
Query: 210 IRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD 389
+R RGGN K+RALRLD+GNFSWGSE ++KTRII V Y+ SNNELVRT TL K+AIV +D
Sbjct: 46 VRVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQID 105
Query: 390 ATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGAL 560
A PFR WYE+HY + +G KG K T +S+ RK+ AR +KV+ AL
Sbjct: 106 AAPFRVWYETHYGILMG-SKGKKATSTP-----NPKSKHVQRKHSARLGDSKVDSAL 156
Score = 69.7 bits (163), Expect = 5e-13
Identities = 31/44 (70%), Positives = 36/44 (81%)
Frame = +2
Query: 74 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIH 205
MGI+RD HKR ATG KRA RKKRK+ELGR +NTR+GP+RIH
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIH 44
Score = 54.4 bits (125), Expect = 2e-08
Identities = 24/38 (63%), Positives = 29/38 (76%)
Frame = +2
Query: 578 GRLLACVASRPGQCGRADGYILXGKELEFYLXKIKSKR 691
GRL A V+SRPGQ GR DGYIL G+EL FYL ++ K+
Sbjct: 163 GRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 126 bits (303), Expect = 6e-30
Identities = 65/117 (55%), Positives = 81/117 (69%)
Frame = +3
Query: 210 IRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD 389
+R RGGN K+RALRLD+GNFSWGSE ++KTRII V Y+ SNNELVRT TL K+AIV +D
Sbjct: 46 VRVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQID 105
Query: 390 ATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGAL 560
A PFR WYE+HY + +G KG K T +S+ RK+ AR +KV+ AL
Sbjct: 106 AAPFRVWYETHYGILMG-SKGKKATATP-----TPKSKHVQRKHSARLGDSKVDSAL 156
Score = 69.7 bits (163), Expect = 5e-13
Identities = 31/44 (70%), Positives = 36/44 (81%)
Frame = +2
Query: 74 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIH 205
MGI+RD HKR ATG KRA RKKRK+ELGR +NTR+GP+RIH
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIH 44
Score = 54.4 bits (125), Expect = 2e-08
Identities = 24/38 (63%), Positives = 29/38 (76%)
Frame = +2
Query: 578 GRLLACVASRPGQCGRADGYILXGKELEFYLXKIKSKR 691
GRL A V+SRPGQ GR DGYIL G+EL FYL ++ K+
Sbjct: 163 GRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 29.1 bits (62), Expect = 0.90
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = -1
Query: 258 CPDAAHGT*YF--HHVNESEWIR*GPSLVFAAGRPNSYFLFLRMGARFPPV 112
CPD + G Y V + ++R PS+++A ++ LF+R+ ++PP+
Sbjct: 307 CPDPSQGFNYCIREAVFQGYFVRPLPSIIWALFEFSAVALFIRLKMKYPPL 357
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 27.9 bits (59), Expect = 2.1
Identities = 21/74 (28%), Positives = 36/74 (48%)
Frame = +3
Query: 195 SVSTPIRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNA 374
+V +P +R T R+L +G S S ++ +TR V +AS+N L+ + ++
Sbjct: 534 TVISPQPTRRSRTPIRSL---SGRSSVASSRNSSRTRSYSNVSSASSNSLISIISSKPSS 590
Query: 375 IVVVDATPFRQWYE 416
V TPF +E
Sbjct: 591 STVQRQTPFHSPFE 604
>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 44 FLLFFFDPTKMGISRDHWHKRRATGGKRAPIRKKRKYEL 160
FL FF ++G + + K + GK AP+ K+K+ L
Sbjct: 273 FLSIFFKEVRVGNTATNVRKPESFTGKTAPLSFKQKFML 311
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -3
Query: 103 LMPVIPTNTHLSWVKKKK 50
L+PVI T THLS V+ KK
Sbjct: 1208 LIPVITTYTHLSEVENKK 1225
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +3
Query: 273 WGSEC--STRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRK 446
WGS+ +K + +V+ +++ + +T L AT F + +S+Y +PL R+
Sbjct: 250 WGSQSYLQEKKAGLAEVLNISTSQQKPKTTALDYEVFRHEMATKFSSFADSYYPVPLDRE 309
Query: 447 K 449
+
Sbjct: 310 Q 310
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 62 DPTKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAAN 178
+ TK G + RRA A RKK K + GRP +N
Sbjct: 3 ETTKSGSKKSGQTSRRAIHSCLACRRKKLKCDHGRPCSN 41
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 412 YHCLNGVASTTTIAFLTRVFVRTNS 338
++C N V S T + + VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.8 bits (54), Expect = 8.4
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +3
Query: 186 SVLSVSTPIRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLV 365
SVL +S S+ + KYR + T WG E I+ + + E T L+
Sbjct: 128 SVLGMSYSNTSKHESLKYRLQGVTTDPSLWGHEYVRHLASEIEEEFASRQEEEAPTDDLM 187
Query: 366 KNAIVVV 386
+ A+ +V
Sbjct: 188 ELALTIV 194
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,176
Number of Sequences: 5004
Number of extensions: 53297
Number of successful extensions: 142
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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