Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_E21
(897 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 141 8e-34
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 138 7e-33
01_02_0013 + 10162478-10163581 29 3.8
06_02_0131 + 12161268-12161781,12162123-12162867,12162950-121629... 29 6.6
01_01_1134 + 8994315-8995892 29 6.6
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 28 8.8
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 28 8.8
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 141 bits (341), Expect = 8e-34
Identities = 72/127 (56%), Positives = 88/127 (69%), Gaps = 8/127 (6%)
Frame = +3
Query: 210 IRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD 389
+R RGGN K+RALRLDTGN+SWGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VD
Sbjct: 47 VRVRGGNLKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVD 106
Query: 390 ATPFRQWYESHYTLPLGRKK--------GAKLTEAEEAIINKKRSQKTARKYLARQRLAK 545
A PF+QWY +HY + +GRKK A+ E E A K+S RK RQ+
Sbjct: 107 AAPFKQWYLTHYGVDIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNHVVRKLEKRQQTRT 166
Query: 546 VEGALXE 566
++ + E
Sbjct: 167 LDSHIEE 173
Score = 73.3 bits (172), Expect = 2e-13
Identities = 30/41 (73%), Positives = 37/41 (90%)
Frame = +2
Query: 575 TGRLLACVASRPGQCGRADGYILXGKELEFYLXKIKSKRAK 697
+GRLLAC++SRPGQCGRADGYIL GKELEFY+ K++ K+ K
Sbjct: 177 SGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
Score = 62.5 bits (145), Expect = 4e-10
Identities = 29/42 (69%), Positives = 32/42 (76%)
Frame = +2
Query: 74 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR 199
MGISRD HKRRATGGK+ RKKRKYELGR ANT+L +
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNK 42
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 138 bits (333), Expect = 7e-33
Identities = 65/93 (69%), Positives = 77/93 (82%), Gaps = 2/93 (2%)
Frame = +3
Query: 210 IRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD 389
+R RGGN K+RALRLDTGN+SWGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VD
Sbjct: 47 VRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVD 106
Query: 390 ATPFRQWYESHYTLPLGRKKGAKLT--EAEEAI 482
A PF+QWY +HY + +GRKK A +AE A+
Sbjct: 107 AAPFKQWYLTHYGVDIGRKKKAPAAKKDAEHAL 139
Score = 73.3 bits (172), Expect = 2e-13
Identities = 30/41 (73%), Positives = 37/41 (90%)
Frame = +2
Query: 575 TGRLLACVASRPGQCGRADGYILXGKELEFYLXKIKSKRAK 697
+GRLLAC++SRPGQCGRADGYIL GKELEFY+ K++ K+ K
Sbjct: 194 SGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 234
Score = 62.5 bits (145), Expect = 4e-10
Identities = 29/42 (69%), Positives = 32/42 (76%)
Frame = +2
Query: 74 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR 199
MGISRD HKRRATGGK+ RKKRKYELGR ANT+L +
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNK 42
>01_02_0013 + 10162478-10163581
Length = 367
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 226 EILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQRPL 363
E +S RC P+ G R + A SL + ++HL +C RPL
Sbjct: 240 EYMSPERCA--PMAMAGARVARAADVWSLGITVLHLYQGYCPARPL 283
>06_02_0131 +
12161268-12161781,12162123-12162867,12162950-12162986,
12163083-12163216,12163298-12163625
Length = 585
Score = 28.7 bits (61), Expect = 6.6
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Frame = -3
Query: 400 NGVASTTTIAFLTRVFVRTNS---LLDALYTTSMIRVLRVEHSDPQEKLPVSRRSARYLV 230
+G+ ST ++ FL + T + +L+ +YT ++ EH DP + + ++RYL+
Sbjct: 392 SGLQSTQSLPFLEEHDMSTEAFEKVLEYMYTDNL------EHMDPNQAEELFDIASRYLL 445
Query: 229 FPPRERIGVDTL 194
F P +R+ D L
Sbjct: 446 F-PLKRVVADIL 456
>01_01_1134 + 8994315-8995892
Length = 525
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 261 GNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFR 404
G FS C+ RK +DV + RT +N+ VV D+T F+
Sbjct: 146 GLFSRDCPCAGRKAVTVDVASEPRSPATPRTHARFENSHVVADSTIFK 193
>12_01_1080 + 11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Frame = +3
Query: 255 DTGN-FSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD-ATPF 401
DT N FS+GS+ ++ + + + ++ S+ ++ + +V NA +VV A+PF
Sbjct: 1340 DTNNCFSYGSQRASTERTLGNDMHPGSSIQITESARIVNNANIVVQVASPF 1390
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3
Query: 222 GGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVV 383
GG T R +R + C +++ ++V++ + NELV T +N I+V
Sbjct: 383 GGGTADRCIRFWNTTTNMHLNCVDTGSQVCNLVWSKNVNELVSTHGYSQNQIIV 436
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,639,520
Number of Sequences: 37544
Number of extensions: 393081
Number of successful extensions: 1111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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