Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_E21
(897 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 181 5e-46
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 31 0.85
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.85
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.85
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 31 0.85
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 31 0.85
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 31 0.85
U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical pr... 29 6.0
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 181 bits (441), Expect = 5e-46
Identities = 83/124 (66%), Positives = 98/124 (79%)
Frame = +3
Query: 210 IRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVD 389
+R+RGGN KYRALRLD+GNFSW SE +TRKTRI+D +YNA+NNELVRTKTLVK AI+ VD
Sbjct: 46 VRTRGGNEKYRALRLDSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVD 105
Query: 390 ATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEX 569
A PFRQWYE+HY LPL RKK AKL+E + AI+NKKRS T +KY RQ+ A V+ L E
Sbjct: 106 AAPFRQWYEAHYALPLARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVDALLIEQ 165
Query: 570 STRG 581
G
Sbjct: 166 FNTG 169
Score = 63.7 bits (148), Expect = 2e-10
Identities = 28/42 (66%), Positives = 37/42 (88%)
Frame = +2
Query: 572 HTGRLLACVASRPGQCGRADGYILXGKELEFYLXKIKSKRAK 697
+TGRLLA ++S PGQ G+A+GYIL GKEL+FYL KI++K+AK
Sbjct: 167 NTGRLLARISSSPGQVGQANGYILEGKELDFYLRKIRAKKAK 208
Score = 62.9 bits (146), Expect = 3e-10
Identities = 27/43 (62%), Positives = 32/43 (74%)
Frame = +2
Query: 74 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRI 202
MGISRD WHKR TG + KKRK+ELGRPAANT++G R+
Sbjct: 1 MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRV 43
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 31.5 bits (68), Expect = 0.85
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 243 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 347
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.85
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 243 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 347
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.85
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 243 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 347
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.85
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 243 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 347
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 31.5 bits (68), Expect = 0.85
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 243 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 347
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 31.5 bits (68), Expect = 0.85
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 243 ALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELV 347
A+++D G+F+WGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical
protein C37H5.5 protein.
Length = 778
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +3
Query: 441 RKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXE 566
+K G A++ I K+++ KTA+KY +++LA++E L E
Sbjct: 424 KKSGKDALIAKKYQIKKEKASKTAKKY--KKQLARLEADLLE 463
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,279,990
Number of Sequences: 27780
Number of extensions: 317654
Number of successful extensions: 897
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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