Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_E19
         (868 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces pomb...    28   1.5  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    28   1.5  
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    28   2.0  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.5  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    26   6.0  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    26   8.0  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    26   8.0  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    26   8.0  

>SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 353

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -2

Query: 660 GIISVIMLXHQFSTSSVHQVLILQYLHP-ILHLISARQNFLNGNALVHLSIDLNQI 496
           G +  ++L +++ST    QV  ++YL P  +H I + Q F      V LS +L ++
Sbjct: 233 GKLIAVLLDNEYSTKGAAQVDGIRYLLPEQIHRILSGQTFDGKPVRVELSAELEEL 288


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
 Frame = +3

Query: 171 PIKKMRKRKSLKLNEEDSDGSGQ----GAEPEEF-QDSGEDWTPDADSNEPASRTGRKRV 335
           P KK        LNE+    S +      + EEF +DS      + D+NEP+++   K V
Sbjct: 210 PKKKKNASWGKMLNEDPEYDSAEEDYLSTDSEEFSEDSDNSSEENKDTNEPSTKDAEKTV 269

Query: 336 SKAPVN 353
            +  VN
Sbjct: 270 PEDVVN 275


>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +3

Query: 189 KRKSLKLNE-EDSDGSGQGAEPEEFQDSGEDWTPDADSN-EPASRTGRKRVSKAPVNNTK 362
           K+K   LNE ED D +G G    E  D  E    +A+++ E +S+    + S A     +
Sbjct: 59  KKKDSSLNESEDEDFAGFGESASE-NDELESAESEAENDEESSSQKSNSKESHAQRKKLQ 117

Query: 363 KKRK 374
           K+RK
Sbjct: 118 KERK 121


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 345 VPLIHVFCQYEMQVRSNRRPASNLHQSPEILLVQRPALTHPNL-LRLTL 202
           +PL+ + C     +    R AS+LHQ    +L     LT P+L LRL L
Sbjct: 386 IPLVTITC-LTSALAEYARDASDLHQLQNSILRVNSTLTSPSLDLRLEL 433


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 213 EEDSDGSGQGAEPEEFQDSGE-DWTPDAD 296
           EE+ D  G+G E EE +D G+ D   D D
Sbjct: 187 EEEFDEEGEGDEEEEEEDDGDGDGEGDGD 215


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/52 (23%), Positives = 23/52 (44%)
 Frame = +3

Query: 210 NEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNTKK 365
           +EEDS+ S +     E +   E+ +   + ++ + R+G     K P     K
Sbjct: 96  SEEDSEVSDESESESESESESEEESESEEESDESERSGPSSFLKKPEKEEAK 147


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 207 LNEEDSDGSGQGAEPEEFQDSGEDWTPDADSNEPAS 314
           ++ +D D S Q A  EE+ D  +D   D D NE ++
Sbjct: 228 IDGQDDDSSEQTAAFEEYDDDDDD---DVDDNEQSN 260


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +3

Query: 201 LKLNEEDSDGSGQGAEPEE---FQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNTKKKR 371
           L L+EE+S+ S +  + ++    +D G +   D D         +K+ SK   +  KK R
Sbjct: 136 LSLDEEESESSEKSKKKKKKSKSKDDGSEALDDGDIESSEKDKKKKKKSKENDDAPKKDR 195

Query: 372 K 374
           K
Sbjct: 196 K 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,116,358
Number of Sequences: 5004
Number of extensions: 61071
Number of successful extensions: 213
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)