Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_E17
(875 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc... 47 3e-06
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 29 0.66
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch... 29 1.1
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 29 1.1
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa... 27 4.6
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy... 27 4.6
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 26 6.1
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 26 8.1
>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 402
Score = 47.2 bits (107), Expect = 3e-06
Identities = 42/179 (23%), Positives = 84/179 (46%), Gaps = 9/179 (5%)
Frame = +1
Query: 193 LEQFVLLAKGAKGSACAELIKQVLEAPGVHVFGELLEMPNIKELESGPYATHLKTLNLFA 372
L + V + A EL+++ + +P F +++ +P +++LE L+ L + +
Sbjct: 196 LLEAVKMDNSTADEAVRELVQRAVNSPKYFFFDDIVTLPPVQQLEQST----LQLLGILS 251
Query: 373 YGTYKDYI----ENKSDYLELTTVQ---CKKLQHLTIATLATQ--EKCIPYSVLLEELDI 525
G DY+ EN + + +K++ LTIA+LATQ + Y + + L I
Sbjct: 252 GGMTDDYVSWVAENHAHCQHQKFDEDAIARKMKLLTIASLATQAPNNTLSYGDVAKSLKI 311
Query: 526 KNVRDLEDLIIEAIYADIIHGKLDQECKRVEVDVALGRDARLEDAASIADVLADWXQCL 702
+ ++E II+ I A ++ G++ Q K + + + R + ++ + LA W L
Sbjct: 312 -DENEVELWIIDVIRAGLVEGRMSQLTKTLSIHRSSYRVFGKHEWVALHEKLAKWGSSL 369
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 29.5 bits (63), Expect = 0.66
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 688 SRPGHQQWKLHLQAAHLCQGPRPLPH 611
++P H+ WK H + H + PRP+PH
Sbjct: 274 TKPDHKPWK-HEEHCHHGKFPRPIPH 298
>SPAC25G10.08 |||translation initiation factor eIF3b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 725
Score = 28.7 bits (61), Expect = 1.1
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Frame = +1
Query: 292 ELLEMPNIKELESGPYATHLKTLNLFAYGTYKDYIENKSDYLELTTVQCKKLQHLTIATL 471
E+ P L S P + ++T NLF K Y ++ DYL + + K + T + L
Sbjct: 379 EITNQPARVALISIPSKSTIRTKNLFNVSDCKLYWQSNGDYLCVKVDRHTKTKKSTFSNL 438
Query: 472 ---ATQEKCIPYSVLLEELDIKNV 534
+EK IP +E +D+K+V
Sbjct: 439 EIFRIREKNIP----VEVVDLKDV 458
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 28.7 bits (61), Expect = 1.1
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +1
Query: 337 YATHLKTLNLFAYGTYKDYIENKSDYLELTTVQCKKLQHLTIATLATQEKCI-PYSVLLE 513
YA + YK Y+E +SDY EL K+L + + + CI S L+
Sbjct: 161 YAKSAHSTKTVVDALYKSYLEKQSDYSELLDNYKKQLNKASESCKGNYQACIESRSTLIT 220
Query: 514 ELD 522
L+
Sbjct: 221 SLE 223
>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 4.6
Identities = 22/61 (36%), Positives = 29/61 (47%)
Frame = +1
Query: 478 QEKCIPYSVLLEELDIKNVRDLEDLIIEAIYADIIHGKLDQECKRVEVDVALGRDARLED 657
Q+ Y + E LD KNV D D IEA LD+E +R+E + D +ED
Sbjct: 423 QDPSWKYDRMPELLDGKNVADFVDPEIEAKLL-----ALDEEEERLEREGYYDSDQEIED 477
Query: 658 A 660
A
Sbjct: 478 A 478
>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 299
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Frame = +1
Query: 421 LTTVQCKKLQHLTIATLATQEKCIP---YSVLLEELD 522
+ ++ CK+LQ L + Q KCI Y V+L++++
Sbjct: 1 MPSIDCKRLQKLAPKSPENQSKCISRLRYMVMLDQVE 37
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 26.2 bits (55), Expect = 6.1
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = +2
Query: 584 TASWTRNVNVWKWTWPLAEMRGLKMQLPLLMSWPTGCNACEAVLNSVDQHIQRANHQKQK 763
+ SW N+ +WK +AE GL+ PL ++ P C +NS+ +Q Q +
Sbjct: 428 SGSWDGNIRLWK----IAE--GLRSFEPLTIATPLSVYGC---INSLSLSLQGKGKQSEV 478
Query: 764 AIRHQQGIEQKI 799
+ G E ++
Sbjct: 479 RVFAACGRETRV 490
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 415 LELTTVQCKKLQHLTIATLATQEKCIPYSVLLEELDIKNVRDLEDL 552
LE V+ KL+H T+ QE C + ++L+ + + L+ L
Sbjct: 295 LEECLVELDKLEHATVLLSTNQELCDQIEINKKKLEFRKEQLLKQL 340
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,382,637
Number of Sequences: 5004
Number of extensions: 67340
Number of successful extensions: 187
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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