Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_E17
(875 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0438 - 18200329-18200430,18201203-18201335,18201964-182020... 102 3e-22
10_08_1034 + 22461397-22461702,22462311-22462524,22464936-224649... 30 2.8
10_08_0985 - 22042801-22042963,22043019-22043138,22043261-220435... 30 2.8
07_03_1144 + 24331104-24331292,24331387-24331611,24332133-243325... 29 3.7
12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,172... 29 4.9
11_01_0229 - 1771701-1774164,1774694-1774847,1774980-1775055,177... 29 4.9
07_03_0270 + 16094334-16094539,16095067-16095177,16095431-16095896 29 6.5
03_06_0060 + 31341233-31342009,31342752-31342871,31343401-313435... 29 6.5
01_06_1022 + 33887089-33888411 29 6.5
>07_03_0438 -
18200329-18200430,18201203-18201335,18201964-18202034,
18202377-18202466,18203200-18203288,18203886-18203961,
18204094-18204264
Length = 243
Score = 102 bits (245), Expect = 3e-22
Identities = 62/168 (36%), Positives = 85/168 (50%), Gaps = 2/168 (1%)
Frame = +1
Query: 193 LEQFVLLAKGAKGSA--CAELIKQVLEAPGVHVFGELLEMPNIKELESGPYATHLKTLNL 366
+EQF A SA A L+ + P + F ELL +P + +L YA+ L L L
Sbjct: 13 IEQFSAQAAALSSSAPQLAALVLEATSHPALFAFSELLSLPALSKLTGTQYASSLDVLRL 72
Query: 367 FAYGTYKDYIENKSDYLELTTVQCKKLQHLTIATLATQEKCIPYSVLLEELDIKNVRDLE 546
FAYGT KDY N + L Q +KL+ L++ TLA K +PY L++ELD+ NVR+LE
Sbjct: 73 FAYGTLKDYKSNSGNLPALLPDQVRKLKQLSVLTLAESTKVLPYDQLMQELDVSNVRELE 132
Query: 547 DLIIEAIYADIIHGKLDQECKRVEVDVALGRDARLEDAASIADVLADW 690
D +I EC V A GRD + ++ D L+DW
Sbjct: 133 DFLIN-------------ECM-YSVQFATGRDLTPDQLNNMIDTLSDW 166
>10_08_1034 +
22461397-22461702,22462311-22462524,22464936-22464997,
22465035-22465381,22465495-22465591
Length = 341
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 457 SDAVISCTGLWLILNSPICSQCSPYMC 377
+DAV C+GL+ I N+P SQ + C
Sbjct: 74 ADAVHGCSGLFAIFNTPSSSQSQSHSC 100
>10_08_0985 -
22042801-22042963,22043019-22043138,22043261-22043562,
22044055-22044351,22044448-22044556,22044826-22045358,
22045446-22045644,22045741-22045865,22045937-22046020,
22046093-22046221,22046337-22046465,22046593-22046739,
22047106-22047346,22047859-22047980
Length = 899
Score = 29.9 bits (64), Expect = 2.8
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = +1
Query: 334 PYATHLKTLNLFAYGTYKDYIENKSDYLELTT---VQCKKLQHLTIATLATQEKCIPYSV 504
P L+ NLF+ K Y +N +YL + + KK + +E+ IP V
Sbjct: 399 PGKEELRQKNLFSVSDCKMYWQNSGEYLAVQVDRYTKTKKSTYTGFELFRIKERDIPIEV 458
Query: 505 LLEELDIKN 531
L ELD KN
Sbjct: 459 L--ELDNKN 465
>07_03_1144 +
24331104-24331292,24331387-24331611,24332133-24332521,
24332762-24332856,24333300-24333673
Length = 423
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = -3
Query: 717 LSTASQALXPVGQDISNGSCIFKPRISAKGHVHFHTFT--FLVQLAVNYVC 571
++T ++ + V S+ S + ++A G V HTFT L+QLA + C
Sbjct: 327 VATGAEPVQGVVHSSSSSSHVVSTVVAAVGPVWIHTFTTSLLLQLAARFAC 377
>12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,
1722327-1722485,1722552-1722662,1722791-1722841,
1722948-1723192,1723745-1725278
Length = 1595
Score = 29.1 bits (62), Expect = 4.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 517 IPQVTHCKGYISLVLQVLQWSDA 449
+P+VTHC + L+++ +W DA
Sbjct: 940 LPEVTHCNRLLKLLVEQRRWDDA 962
>11_01_0229 -
1771701-1774164,1774694-1774847,1774980-1775055,
1775439-1775477,1778516-1778674,1778741-1778851,
1779014-1779064,1779173-1779256
Length = 1045
Score = 29.1 bits (62), Expect = 4.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 517 IPQVTHCKGYISLVLQVLQWSDA 449
+P+VTHC + L+++ +W DA
Sbjct: 389 LPEVTHCNRLLKLLVEQRRWDDA 411
>07_03_0270 + 16094334-16094539,16095067-16095177,16095431-16095896
Length = 260
Score = 28.7 bits (61), Expect = 6.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 454 DAVISCTGLWLILNSPICSQ 395
D +++CT WL + SP CSQ
Sbjct: 190 DMMMACTPSWLFIPSPACSQ 209
>03_06_0060 +
31341233-31342009,31342752-31342871,31343401-31343517,
31343615-31343704,31344279-31344386,31345124-31345306
Length = 464
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +1
Query: 151 DEPSSLLS-FSSNHPLEQFVLLAKGAKGSACAELIKQVLEAPGVHVFGELLEMP 309
D+ LLS +S HPL + L +GA G+A +K V GV++ + P
Sbjct: 391 DQSRELLSTLASMHPLSAYERLRRGALGTAVDADVKPVPARDGVNLMEKARPKP 444
>01_06_1022 + 33887089-33888411
Length = 440
Score = 28.7 bits (61), Expect = 6.5
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = -3
Query: 735 MC*STELSTASQALXPV-GQDISNGS----CIFKPRISAKGHVHFHTFTFLVQLAVNYV 574
+C S++L++A + +D+ + S C F A+G F T TF QLA +YV
Sbjct: 123 LCRSSDLASARAFFDGIPDKDVVSWSTMLACYFSHSRVAEGLAFFRTMTFTTQLAADYV 181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,945,756
Number of Sequences: 37544
Number of extensions: 444999
Number of successful extensions: 1124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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