Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_E17
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   4.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   6.5  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +2

Query: 557 LKLFMQT*FTASWTRNVNVWKW 622
           +K+F +    A W+ N  +W W
Sbjct: 395 MKVFDELLLDADWSVNAGMWMW 416


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 454 DAVISCTGLWLILNSPICSQCSPY 383
           D  ++C G  L  +  + S CSPY
Sbjct: 33  DVTLACDGRSLKAHRVVLSACSPY 56


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -3

Query: 723 TELSTASQALXPVGQDISNGSCIFKPRISAKGHVHF 616
           TE  T   +   +G+D+ N S + K R       HF
Sbjct: 369 TESDTKLSSQGILGEDVENNSEVSKSRTKESAWRHF 404


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 633 KGHVHFHTFTFLVQLAV 583
           K HVHFH +T  V + V
Sbjct: 191 KQHVHFHDYTGSVVIHV 207


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,945
Number of Sequences: 438
Number of extensions: 4568
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)