Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_E15
(982 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.009
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.14
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.43
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 1.0
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 2.3
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 28 2.3
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 4.0
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 27 5.3
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 27 5.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 7.1
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.9 bits (79), Expect = 0.009
Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = +1
Query: 715 PPXXXGXVPGGSPXXTPXPPPAPXPX--QNXXPXXXVXGAXPPPP 843
PP VP +P P PPPAP P V GA PPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 31.5 bits (68), Expect = 0.19
Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Frame = +3
Query: 828 PPPPPXX--KKXAXPXFPPPXHGPXLXPFXX*GPXPXAXRGXXXPPPPPP 971
PPPPP A P P P + P P PPPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 30.7 bits (66), Expect = 0.33
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +1
Query: 694 PXXGGGXPPXXXGXVPGGSPXXTPXPPPA 780
P GG PP V G P P PPPA
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784
Score = 30.3 bits (65), Expect = 0.43
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +2
Query: 806 PXTGXXGPXPPPPXKKXXGPLXPPP 880
P G P PPPP GP PPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 29.9 bits (64), Expect = 0.57
Identities = 17/48 (35%), Positives = 17/48 (35%)
Frame = +3
Query: 828 PPPPPXXKKXAXPXFPPPXHGPXLXPFXX*GPXPXAXRGXXXPPPPPP 971
PPPPP P P P P P P P G PPPP
Sbjct: 732 PPPPPPAVIVPTPA-PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 29.5 bits (63), Expect = 0.76
Identities = 15/47 (31%), Positives = 16/47 (34%)
Frame = +1
Query: 739 PGGSPXXTPXPPPAPXPXQNXXPXXXVXGAXPPPPXKKXXRXPXSPP 879
P P P PAP P P + G PPPP PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 26.2 bits (55), Expect = 7.1
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 825 GPPPPPXXKKXAXPXFPPPXHGP 893
GPPPPP A PPP P
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPP 782
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.9 bits (69), Expect = 0.14
Identities = 22/75 (29%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
Frame = +1
Query: 658 PPAGTTQKKILPPXXGGGXPPXXXGXVPGGSPXXTPXPPPAP--XPXQNXXPXXXVXGAX 831
PP T LPP PP +P G+P P PP AP P P
Sbjct: 415 PPVPTPPS--LPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPA 472
Query: 832 PPPPXKKXXRXPXSP 876
P P P +P
Sbjct: 473 APAPPPAPAPAPAAP 487
Score = 31.1 bits (67), Expect = 0.25
Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 9/57 (15%)
Frame = +3
Query: 828 PPPPPXXKKXAXPXF---------PPPXHGPXLXPFXX*GPXPXAXRGXXXPPPPPP 971
PPPPP + P PPP P G P +G PPPPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAA---GSIPLPPQGRSAPPPPPP 366
Score = 28.7 bits (61), Expect = 1.3
Identities = 17/63 (26%), Positives = 17/63 (26%)
Frame = +1
Query: 691 PPXXGGGXPPXXXGXVPGGSPXXTPXPPPAPXPXQNXXPXXXVXGAXPPPPXKKXXRXPX 870
PP PP P P P PP P P A PP P P
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPA 479
Query: 871 SPP 879
P
Sbjct: 480 PAP 482
Score = 27.9 bits (59), Expect = 2.3
Identities = 21/101 (20%), Positives = 29/101 (28%)
Frame = +1
Query: 670 TTQKKILPPXXGGGXPPXXXGXVPGGSPXXTPXPPPAPXPXQNXXPXXXVXGAXPPPPXK 849
+T +PP PP + +P P P P + P
Sbjct: 226 STSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAIN 285
Query: 850 KXXRXPXSPPXXTDRYSPXSXGKXRXXPXXEGXXXPPPPPR 972
+ P PP + + K R P PPPP R
Sbjct: 286 STSKPPLPPPSSRVSAAALAANKKRPPP-------PPPPSR 319
Score = 27.1 bits (57), Expect = 4.0
Identities = 19/76 (25%), Positives = 26/76 (34%)
Frame = +1
Query: 742 GGSPXXTPXPPPAPXPXQNXXPXXXVXGAXPPPPXKKXXRXPXSPPXXTDRYSPXSXGKX 921
G + PPP P P N G+ P PP + +PP R +P + +
Sbjct: 328 GNGSSNSSLPPPPPPPRSN------AAGSIPLPPQGR-----SAPPPPPPRSAPSTGRQP 376
Query: 922 RXXPXXEGXXXPPPPP 969
PP PP
Sbjct: 377 PPLSSSRAVSNPPAPP 392
Score = 26.6 bits (56), Expect = 5.3
Identities = 20/90 (22%), Positives = 22/90 (24%)
Frame = +1
Query: 691 PPXXGGGXPPXXXGXVPGGSPXXTPXPPPAPXPXQNXXPXXXVXGAXPPPPXKKXXRXPX 870
P G PP G P P PP + P PPPP
Sbjct: 317 PSRRNRGKPPIGNGSSNSSLPPPPP-PPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQ 375
Query: 871 SPPXXTDRYSPXSXGKXRXXPXXEGXXXPP 960
PP + R P PP
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAPALPP 405
Score = 26.6 bits (56), Expect = 5.3
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +2
Query: 827 PXPPPPXKKXXGPLXPPPXXRTXTXP 904
P PPPP G + PP R+ P
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPP 363
Score = 25.8 bits (54), Expect = 9.3
Identities = 22/95 (23%), Positives = 25/95 (26%), Gaps = 10/95 (10%)
Frame = +1
Query: 715 PPXXXGXVPGGSPXXTPXPPPAPXPXQNXXPXXXVXG-AXPPPPXKKXXRXPXSPPXXTD 891
PP V + PP P P PPPP R PP
Sbjct: 271 PPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNG 330
Query: 892 RYS---------PXSXGKXRXXPXXEGXXXPPPPP 969
+ P S +G PPPPP
Sbjct: 331 SSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.3 bits (65), Expect = 0.43
Identities = 23/102 (22%), Positives = 23/102 (22%)
Frame = +1
Query: 658 PPAGTTQKKILPPXXGGGXPPXXXGXVPGGSPXXTPXPPPAPXPXQNXXPXXXVXGAXPP 837
PP P G PP V PP P P P PP
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180
Query: 838 PPXKKXXRXPXSPPXXTDRYSPXSXGKXRXXPXXEGXXXPPP 963
P P PP S G P P P
Sbjct: 1181 VPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222
Score = 27.9 bits (59), Expect = 2.3
Identities = 22/102 (21%), Positives = 25/102 (24%)
Frame = +1
Query: 658 PPAGTTQKKILPPXXGGGXPPXXXGXVPGGSPXXTPXPPPAPXPXQNXXPXXXVXGAXPP 837
PP + P G PP V PP P P P GA P
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPV 1161
Query: 838 PPXKKXXRXPXSPPXXTDRYSPXSXGKXRXXPXXEGXXXPPP 963
P +P + G P E P P
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKP 1203
Score = 27.5 bits (58), Expect = 3.1
Identities = 20/73 (27%), Positives = 25/73 (34%)
Frame = +1
Query: 661 PAGTTQKKILPPXXGGGXPPXXXGXVPGGSPXXTPXPPPAPXPXQNXXPXXXVXGAXPPP 840
PA +++ +P G P G P P + PP P P P GA PP
Sbjct: 1067 PAPSSEIPSIPAPSGAPPVPAPSGIPP--VPKPSVAAPPVPKPSVAVPPVPAPSGA-PPV 1123
Query: 841 PXKKXXRXPXSPP 879
P P P
Sbjct: 1124 PKPSVAAPPVPVP 1136
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.1 bits (62), Expect = 1.0
Identities = 18/64 (28%), Positives = 21/64 (32%)
Frame = +1
Query: 658 PPAGTTQKKILPPXXGGGXPPXXXGXVPGGSPXXTPXPPPAPXPXQNXXPXXXVXGAXPP 837
PP + +PP PP P S P P AP P + A PP
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAP--SLPSAVPP 196
Query: 838 PPXK 849
P K
Sbjct: 197 MPPK 200
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.9 bits (59), Expect = 2.3
Identities = 19/49 (38%), Positives = 19/49 (38%)
Frame = -1
Query: 970 GGGGGGXXXPLXAXGXGPYXXXGXSXGPXLGGGXXGXAXFFXXGGGGGP 824
GGG GG G GP G G GGG G GG GGP
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGG--FGGGPGGFGG--GPGGHGGP 271
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 27.9 bits (59), Expect = 2.3
Identities = 17/49 (34%), Positives = 17/49 (34%)
Frame = -2
Query: 969 GGGGGGXXXLXXRXXXXLTXRXGXVXVRXXGGGXRGPXXFFXGGGGXGP 823
GGGG G G R GGG G GGGG GP
Sbjct: 135 GGGGMGGGMGGMGGMDDDMDMDGGFGTRTRGGGMPGGFANMFGGGGAGP 183
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.1 bits (57), Expect = 4.0
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = +3
Query: 831 PPPPXXKKXAXPXFPPPXHGPXLXPFXX*GPXPXAXRGXXXPPPPP 968
PPPP K PPP H P P P PPPP
Sbjct: 208 PPPPMHHKPGEHMPPPPMHH---EPGEHMPPPPMHHEPGEHMPPPP 250
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +1
Query: 751 PXXTPXPPPAPXPXQNXXPXXXVXGAXPP 837
P T PPPAP Q P V G P
Sbjct: 27 PPRTMAPPPAPSRVQQAPPPTAVQGGSSP 55
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 26.6 bits (56), Expect = 5.3
Identities = 15/46 (32%), Positives = 16/46 (34%)
Frame = +3
Query: 831 PPPPXXKKXAXPXFPPPXHGPXLXPFXX*GPXPXAXRGXXXPPPPP 968
PPPP A P PPP + P P A P P P
Sbjct: 48 PPPPSVDHSAPPSGPPPSYSNSAAP-----ATPAASASSAAPAPAP 88
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 7.1
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 828 PPPPPXXKKXAXPXFPPP 881
PPPPP + + P PPP
Sbjct: 12 PPPPPGFEPPSQPPPPPP 29
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,014,302
Number of Sequences: 5004
Number of extensions: 27545
Number of successful extensions: 300
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 505288058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -