Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_E14
         (961 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   6.9  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    26   6.9  
SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom...    26   9.1  

>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 22/80 (27%), Positives = 35/80 (43%)
 Frame = +1

Query: 250  PGRPDLRLFVKVAKMSENVRAHAINSVYDTELLVYEELSRLYRALEEERGVAEPERFVFP 429
            PGRP+ R  +K+    E     A+    D  LL  +    + RALE+E  +     F+  
Sbjct: 1150 PGRPETRHKLKLVTREEIKGTVAVVCEVDGYLLSGQGQKVIVRALEDEDHLVGVS-FIDL 1208

Query: 430  ALYGARSRRLEEALVLEDLR 489
              Y   ++ L   L+  D+R
Sbjct: 1209 GSYTLSAKCLRNLLLFGDVR 1228


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 325 SVYDTELLVYEELSRLYRALEEERGVAEPE 414
           SV +TE   +EEL RL +A+  +R VA P+
Sbjct: 4   SVLETERYAHEELERLQQAI-VDRQVANPK 32


>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 171

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 232 RARLQAP-GRPDLRLFVKVAKMSENVRAHAINSVYDTELLVY 354
           RA LQ P GR  +R F+K AK   N+R  A ++VY   +L Y
Sbjct: 61  RAGLQFPVGR--VRRFLK-AKTQNNMRVGAKSAVYSAAVLEY 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,119,025
Number of Sequences: 5004
Number of extensions: 30623
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)