Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_E14
(961 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0090 + 6676296-6676802,6678550-6678855 35 0.11
06_01_0048 + 436156-436406,436514-436693,436725-437133 33 0.34
02_05_0067 + 25557975-25558553 31 1.4
10_02_0072 - 4936950-4937363 30 3.1
05_03_0428 + 13899295-13899669 29 4.2
08_01_0233 + 1876940-1877509,1907940-1908195,1908290-1908589,190... 29 7.3
05_05_0106 + 22435192-22435614,22436880-22436968,22437617-224378... 29 7.3
04_04_1016 - 30139691-30139951,30140066-30140134,30141267-301414... 29 7.3
04_04_1009 - 30078988-30079248,30079363-30079431,30080564-300807... 29 7.3
01_06_0141 - 26905855-26906928 29 7.3
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707... 28 9.6
03_05_0162 + 21413354-21413369,21413651-21413973 28 9.6
>02_02_0090 + 6676296-6676802,6678550-6678855
Length = 270
Score = 34.7 bits (76), Expect = 0.11
Identities = 16/31 (51%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +2
Query: 179 CCSRCPPCGANYTSTAV-PGPACRPRADPTC 268
CC CG NY S V GPA RP AD C
Sbjct: 172 CCKPPAVCGYNYVSPTVWAGPAARPAADADC 202
>06_01_0048 + 436156-436406,436514-436693,436725-437133
Length = 279
Score = 33.1 bits (72), Expect = 0.34
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 628 WRGAWRCASTWR-APARG-RAAVEPXRWXATXA 720
WRG WR + WR P +G R + E RW +T A
Sbjct: 236 WRGLWRTKTGWRETPVQGSRMSAELERWWSTGA 268
>02_05_0067 + 25557975-25558553
Length = 192
Score = 31.1 bits (67), Expect = 1.4
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 422 CSPRCTARGRGGSRKHWCWRTCARRGSAPATACAP-WTGSTRA 547
C+P T R SR H C C S P AC+P TGST+A
Sbjct: 40 CNPSGTLRP---SRSHSCQDCCKAGRSYPTYACSPATTGSTKA 79
>10_02_0072 - 4936950-4937363
Length = 137
Score = 29.9 bits (64), Expect = 3.1
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = -3
Query: 830 GGETRRXCGRSAG-LXVPESRXXGXGRRPVXXPXPXX-RAXVAXQRQGSTAARPRAGALQ 657
GG+ ++ G + + P + G RR P RA V + Q +T++RP AGA
Sbjct: 23 GGDRKKNVGANKKEINQPPATSTGGKRRLATTPAAATTRADVRPKLQPTTSSRPAAGAAA 82
Query: 656 VEAHLHAPRQP 624
V A + P
Sbjct: 83 VRADTKPRKHP 93
>05_03_0428 + 13899295-13899669
Length = 124
Score = 29.5 bits (63), Expect = 4.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 452 GGSRKHWCWRTCARRGSAPATAC 520
GGSR+HW T +R +PA C
Sbjct: 78 GGSRRHWTCSTSSRSCRSPAPVC 100
>08_01_0233 +
1876940-1877509,1907940-1908195,1908290-1908589,
1908777-1908939,1908958-1908994,1910122-1910742
Length = 648
Score = 28.7 bits (61), Expect = 7.3
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 649 ASTWRAPARGRAAVE-PXRWXATXALIXGXG 738
AS+WRAP R R+ V+ RW A A+I G G
Sbjct: 184 ASSWRAPRRQRSMVDTDERWRA--AVIGGGG 212
>05_05_0106 +
22435192-22435614,22436880-22436968,22437617-22437814,
22438475-22438679,22438749-22438916,22439095-22439262,
22439344-22439534,22440776-22440879,22441285-22441298
Length = 519
Score = 28.7 bits (61), Expect = 7.3
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +2
Query: 443 RGRGGSRKHWCWRTCARRGSAPATACAPWTG 535
RG GGS + RT + GSA A+A A WTG
Sbjct: 33 RGGGGSGR----RTPGKGGSASASAAAGWTG 59
>04_04_1016 -
30139691-30139951,30140066-30140134,30141267-30141470,
30141552-30141808,30141899-30141983,30142080-30142164,
30142269-30142795
Length = 495
Score = 28.7 bits (61), Expect = 7.3
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 500 SAPATACAPWTGSTRAPRWSSWR 568
S+ +++ +PWTGS+ A +SWR
Sbjct: 435 SSSSSSASPWTGSSAAATAASWR 457
>04_04_1009 -
30078988-30079248,30079363-30079431,30080564-30080767,
30080849-30081105,30081196-30081280,30081377-30081461,
30081566-30082092
Length = 495
Score = 28.7 bits (61), Expect = 7.3
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 500 SAPATACAPWTGSTRAPRWSSWR 568
S+ +++ +PWTGS+ A +SWR
Sbjct: 435 SSSSSSASPWTGSSAAATAASWR 457
>01_06_0141 - 26905855-26906928
Length = 357
Score = 28.7 bits (61), Expect = 7.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 836 KVGGETRRXCGRSAGLXVP 780
+ GGE RR CGR G+ +P
Sbjct: 47 RTGGERRRRCGRVGGVEIP 65
>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
27771407-27771773,27772104-27772217,27772307-27772403,
27772968-27773088,27773168-27773252,27773349-27773498,
27773630-27773746,27773819-27773905,27773981-27774049,
27774125-27774181,27774266-27774349,27774477-27774513,
27774721-27774869,27776053-27776538,27776743-27776886,
27776961-27777509,27778332-27778526,27779226-27779310,
27779570-27779670,27779689-27780360,27781101-27781433,
27781957-27782038,27782258-27782334,27782713-27782817,
27783810-27783944,27784437-27785159,27785882-27786663,
27787480-27789187
Length = 2891
Score = 28.3 bits (60), Expect = 9.6
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 315 VRADVLAHFRDLHEESQVGSARGLQA 238
V+A LA RDL +++GS RGL A
Sbjct: 1751 VKAAALAATRDLERTAKIGSGRGLSA 1776
>03_05_0162 + 21413354-21413369,21413651-21413973
Length = 112
Score = 28.3 bits (60), Expect = 9.6
Identities = 21/50 (42%), Positives = 24/50 (48%)
Frame = -3
Query: 806 GRSAGLXVPESRXXGXGRRPVXXPXPXXRAXVAXQRQGSTAARPRAGALQ 657
G +AG S+ G GRR R VA RQG+ A RP A ALQ
Sbjct: 45 GGAAGEHRAASQRGGQGRRCGEEAQGAARRPVALARQGA-ARRPVAAALQ 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,275,896
Number of Sequences: 37544
Number of extensions: 313736
Number of successful extensions: 1293
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2776393380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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