Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_E13
(905 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 3.5
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 3.5
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 3.5
Z79757-8|CAB02128.2| 355|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 25 6.6
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 25 6.6
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 28 8.0
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 28 8.0
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 28 8.0
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 28 8.0
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -2
Query: 772 PXPPGXGGXXXFXXXXXPPPPPP 704
P PP GG PPPPPP
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPP 765
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -2
Query: 772 PXPPGXGGXXXFXXXXXPPPPPP 704
P PP GG PPPPPP
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPP 765
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -2
Query: 772 PXPPGXGGXXXFXXXXXPPPPPP 704
P PP GG PPPPPP
Sbjct: 326 PPPPPPGGLPPISGGPPPPPPPP 348
>Z79757-8|CAB02128.2| 355|Caenorhabditis elegans Hypothetical
protein F55B12.7 protein.
Length = 355
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 186 LKT*PNNQICLEFKQFIIYYTNVRYTYSKIN 94
+KT PN +CL F +++ T Y+Y+++N
Sbjct: 80 VKTVPNIIVCLSFLFWVVPLTAFSYSYNEVN 110
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 25.4 bits (53), Expect(2) = 6.6
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 705 GGGGGGXXXXXXKXXPPXPGGXG 773
GGGGGG PP P G G
Sbjct: 60 GGGGGGCGGGGGCAPPPAPCGGG 82
Score = 21.4 bits (43), Expect(2) = 6.6
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +3
Query: 687 FFXXSXGGGGGG 722
F S GGGGGG
Sbjct: 20 FLFPSAGGGGGG 31
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 25.4 bits (53), Expect(2) = 6.6
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 705 GGGGGGXXXXXXKXXPPXPGGXG 773
GGGGGG PP P G G
Sbjct: 60 GGGGGGCGGGGGCAPPPAPCGGG 82
Score = 21.4 bits (43), Expect(2) = 6.6
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +3
Query: 687 FFXXSXGGGGGG 722
F S GGGGGG
Sbjct: 20 FLFPSAGGGGGG 31
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 28.3 bits (60), Expect = 8.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 705 GGGGGGXXXXXXKXXPPXPGG 767
GGGGGG PP PGG
Sbjct: 91 GGGGGGGCDGCCNPGPPGPGG 111
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 28.3 bits (60), Expect = 8.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 705 GGGGGGXXXXXXKXXPPXPGG 767
GGGGGG PP PGG
Sbjct: 91 GGGGGGGCDGCCNPGPPGPGG 111
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 28.3 bits (60), Expect = 8.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 705 GGGGGGXXXXXXKXXPPXPGG 767
GGGGGG PP PGG
Sbjct: 91 GGGGGGGCDGCCNPGPPGPGG 111
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 28.3 bits (60), Expect = 8.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +3
Query: 705 GGGGGGXXXXXXKXXPPXPGG 767
GGGGGG PP PGG
Sbjct: 91 GGGGGGGCDGCCNPGPPGPGG 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,997,623
Number of Sequences: 27780
Number of extensions: 211181
Number of successful extensions: 1194
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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