Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_E12
         (933 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    28   2.2  
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    28   2.2  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    28   2.2  
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    26   6.6  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    26   8.7  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    26   8.7  

>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -1

Query: 705 ASRLQPRSSAPLTTSAPVSPTRVK--FSSRSGLCSFRKFTAID 583
           AS + PR  +PL+ S P+S  R K  + S  G     K  A D
Sbjct: 125 ASYITPRKGSPLSHSTPLSMFRTKNEYGSNKGFSHINKENADD 167


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 25/95 (26%), Positives = 40/95 (42%)
 Frame = -1

Query: 750 SQQLRPLHHIVKQXSASRLQPRSSAPLTTSAPVSPTRVKFSSRSGLCSFRKFTAIDVFLA 571
           S  ++ L    KQ S     P  ++  TTS  + P+ V FSS+S L +    T  +  L+
Sbjct: 159 SSHIQSLSPESKQTSDGHRPPSPTSITTTSTSIDPS-VAFSSKSTLAT----TRTNAPLS 213

Query: 570 RPMA*ASAYDASRQQXMPSSQYASQRGRAVIGTLE 466
           RP     A   ++   + + Q A    R     L+
Sbjct: 214 RPSQPTKASPLNKFSALEAIQSARSHARYAYSALD 248


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -1

Query: 708 SASRLQPRSSAPLTTSAP 655
           + S LQP +S+P+TTSAP
Sbjct: 306 ATSTLQPTTSSPITTSAP 323


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = +3

Query: 36  RWENXCDTICXPTHXTDTEIHGTKDCRI--NSVXFDXGFHRADIQILI 173
           +W N  + +    H TDTE H   D  +  N V  D G + A   I++
Sbjct: 217 QWINIDEHLSQSLHATDTETHTFTDSLVVLNEVVIDRGPNTAMSDIML 264


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 425 SWNPSNSSGSLEMLKFI 375
           SWNP+N++G +E   F+
Sbjct: 274 SWNPTNNAGEIEYKTFL 290


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 370 RTMNLSISXDPEEFEGFQETTPRYNGTTKDYYF*GSYNGSTSLGCVLA 513
           R  N+SI  +P +FE  Q+  P  +  T  ++   S + S S G  L+
Sbjct: 141 RLSNISIGNNPIDFESSQQNNPS-SLNTSSHHRTSSISNSKSFGTSLS 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,534,996
Number of Sequences: 5004
Number of extensions: 41215
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)