Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_E12
         (933 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC008905-1|AAH08905.1|  483|Homo sapiens coiled-coil domain cont...    75   5e-13
AK075387-1|BAC11587.1|  483|Homo sapiens protein ( Homo sapiens ...    75   5e-13
AK027844-1|BAB55407.1|  483|Homo sapiens protein ( Homo sapiens ...    75   5e-13
AK027786-1|BAB55367.1|  480|Homo sapiens protein ( Homo sapiens ...    75   5e-13
AF226054-1|AAF86954.1|  483|Homo sapiens GK001 protein.                75   5e-13
BC013600-1|AAH13600.2|  358|Homo sapiens CCDC47 protein protein.       69   2e-11

>BC008905-1|AAH08905.1|  483|Homo sapiens coiled-coil domain
           containing 47 protein.
          Length = 483

 Score = 74.5 bits (175), Expect = 5e-13
 Identities = 36/99 (36%), Positives = 53/99 (53%)
 Frame = +2

Query: 458 ITISKVPITARPRWDAYWLEGIXXXXXXXXXXXXXIGRAKNTSIAVNFLKLHKPLLEENF 637
           ITI  VP   +  W++Y+LE +             IG+ KN+ +A  +   H+ LLE NF
Sbjct: 120 ITIVDVPAHLQNSWESYYLEILMVTGLLAYIMNYIIGKNKNSRLAQAWFNTHRELLESNF 179

Query: 638 TLVGETGAEVVSGADXRGWRREAXHCFTMWCSGRSCCEG 754
           TLVG+ G    + +  +   +E  H + +WCSGR CCEG
Sbjct: 180 TLVGDDGTNKEATSTGK-LNQENEHIYNLWCSGRVCCEG 217


>AK075387-1|BAC11587.1|  483|Homo sapiens protein ( Homo sapiens
           cDNA PSEC0077 fis, clone NT2RP2003902, highly similar to
           GK001 protein. ).
          Length = 483

 Score = 74.5 bits (175), Expect = 5e-13
 Identities = 36/99 (36%), Positives = 53/99 (53%)
 Frame = +2

Query: 458 ITISKVPITARPRWDAYWLEGIXXXXXXXXXXXXXIGRAKNTSIAVNFLKLHKPLLEENF 637
           ITI  VP   +  W++Y+LE +             IG+ KN+ +A  +   H+ LLE NF
Sbjct: 120 ITIVDVPAHLQNSWESYYLEILMVTGLLAYIMNYIIGKNKNSRLAQAWFNTHRELLESNF 179

Query: 638 TLVGETGAEVVSGADXRGWRREAXHCFTMWCSGRSCCEG 754
           TLVG+ G    + +  +   +E  H + +WCSGR CCEG
Sbjct: 180 TLVGDDGTNKEATSTGK-LNQENEHIYNLWCSGRVCCEG 217


>AK027844-1|BAB55407.1|  483|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14938 fis, clone PLACE1010622, weakly similar to
           TROPONIN T, CARDIAC MUSCLE ISOFORMS. ).
          Length = 483

 Score = 74.5 bits (175), Expect = 5e-13
 Identities = 36/99 (36%), Positives = 53/99 (53%)
 Frame = +2

Query: 458 ITISKVPITARPRWDAYWLEGIXXXXXXXXXXXXXIGRAKNTSIAVNFLKLHKPLLEENF 637
           ITI  VP   +  W++Y+LE +             IG+ KN+ +A  +   H+ LLE NF
Sbjct: 120 ITIVDVPAHLQNSWESYYLEILMVTGLLAYIMNYIIGKNKNSRLAQAWFNTHRELLESNF 179

Query: 638 TLVGETGAEVVSGADXRGWRREAXHCFTMWCSGRSCCEG 754
           TLVG+ G    + +  +   +E  H + +WCSGR CCEG
Sbjct: 180 TLVGDDGTNKEATSTGK-LNQENEHIYNLWCSGRVCCEG 217


>AK027786-1|BAB55367.1|  480|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14880 fis, clone PLACE1003369. ).
          Length = 480

 Score = 74.5 bits (175), Expect = 5e-13
 Identities = 36/99 (36%), Positives = 53/99 (53%)
 Frame = +2

Query: 458 ITISKVPITARPRWDAYWLEGIXXXXXXXXXXXXXIGRAKNTSIAVNFLKLHKPLLEENF 637
           ITI  VP   +  W++Y+LE +             IG+ KN+ +A  +   H+ LLE NF
Sbjct: 120 ITIVDVPAHLQNSWESYYLEILMVTGLLAYIMNYIIGKNKNSRLAQAWFNTHRELLESNF 179

Query: 638 TLVGETGAEVVSGADXRGWRREAXHCFTMWCSGRSCCEG 754
           TLVG+ G    + +  +   +E  H + +WCSGR CCEG
Sbjct: 180 TLVGDDGTNKEATSTGK-LNQENEHIYNLWCSGRVCCEG 217


>AF226054-1|AAF86954.1|  483|Homo sapiens GK001 protein.
          Length = 483

 Score = 74.5 bits (175), Expect = 5e-13
 Identities = 36/99 (36%), Positives = 53/99 (53%)
 Frame = +2

Query: 458 ITISKVPITARPRWDAYWLEGIXXXXXXXXXXXXXIGRAKNTSIAVNFLKLHKPLLEENF 637
           ITI  VP   +  W++Y+LE +             IG+ KN+ +A  +   H+ LLE NF
Sbjct: 120 ITIVDVPAHLQNSWESYYLEILMVTGLLAYIMNYIIGKNKNSRLAQAWFNTHRELLESNF 179

Query: 638 TLVGETGAEVVSGADXRGWRREAXHCFTMWCSGRSCCEG 754
           TLVG+ G    + +  +   +E  H + +WCSGR CCEG
Sbjct: 180 TLVGDDGTNKEATSTGK-LNQENEHIYNLWCSGRVCCEG 217


>BC013600-1|AAH13600.2|  358|Homo sapiens CCDC47 protein protein.
          Length = 358

 Score = 68.9 bits (161), Expect = 2e-11
 Identities = 32/93 (34%), Positives = 49/93 (52%)
 Frame = +2

Query: 476 PITARPRWDAYWLEGIXXXXXXXXXXXXXIGRAKNTSIAVNFLKLHKPLLEENFTLVGET 655
           P   +  W++Y+LE +             IG+ KN+ +A  +   H+ LLE NFTLVG+ 
Sbjct: 1   PAHLQNSWESYYLEILMVTGLLAYIMNYIIGKNKNSRLAQAWFNTHRELLESNFTLVGDD 60

Query: 656 GAEVVSGADXRGWRREAXHCFTMWCSGRSCCEG 754
           G    + +  +   +E  H + +WCSGR CCEG
Sbjct: 61  GTNKEATSTGK-LNQENEHIYNLWCSGRVCCEG 92


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,080,724
Number of Sequences: 237096
Number of extensions: 1650785
Number of successful extensions: 4139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4098
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12214492840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)