Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_E12
         (933 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   6.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   9.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   9.2  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = +3

Query: 45  NXCDTICXPTHXTDTEIHGTKDCRINS 125
           N  DT C        EIH   D  +N+
Sbjct: 4   NNQDTFCKKMRKATKEIHSISDSLVNA 30


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = -1

Query: 777 EXEREQACPSQQLRPLHHIVKQXSASRLQPRSSAPLTTSAPVSP 646
           + +++    SQQ +P  H  +Q  A + Q   ++PL+     +P
Sbjct: 205 QQQQQSQAASQQSQPGMHPRQQQQAQQHQGVVTSPLSQQQQAAP 248


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 406  EFEGFQETTPRYNGTTKDYYF*GSYNGSTSLGCV 507
            E EGF+      +G T      GS NGS + G V
Sbjct: 1052 EVEGFETKLVLEDGITSSGSDSGSSNGSWTAGTV 1085


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,445
Number of Sequences: 438
Number of extensions: 2998
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30476628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)