Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_E10
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    31   0.30 
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    30   0.40 
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   6.5  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    26   8.5  
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    26   8.5  
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    26   8.5  
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    26   8.5  

>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 23/84 (27%), Positives = 38/84 (45%)
 Frame = -2

Query: 481 TALLLLPNEDLAHHTLLSTKKLKNAQTSERPGENIVKSQEDAINPRYRVIKLSADSLCVA 302
           TA   L   ++ H +    KK K A  S +P      + E+ +N    ++K    SL V 
Sbjct: 42  TAADALITSNIGHRSRQRKKKTKKATNSRKPLSKFQSNTEE-VNED-PILK---PSLSVW 96

Query: 301 SNSRAAVTKAFKFANLPLSELVHQ 230
            N+R  + K     N+P S++ H+
Sbjct: 97  ENNRLLIEKLTSILNIPSSQINHE 120


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
 Frame = +1

Query: 520 THTYKFIAILS----RLLTDSISNEKKIKLLSVMQDISYGIKISWQESYLTSLMKQLTDW 687
           TH+Y+  A LS    R +  S   +++I+ L  +QDIS  + I  +++ L+SL  +L   
Sbjct: 233 THSYQSSATLSIDEQRRVLRSNYFQQEIQFLFALQDISIRLIIVPRQARLSSLRAELALL 292

Query: 688 -------IRXPMTEPHHKAIGHKSLTV 747
                  +  P+   +HK + HK + +
Sbjct: 293 NNNLPADVNIPLLRSYHKEVSHKIVRI 319


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 237  TNSDNGKFANLKAFVTAAREFEATHSESALNLMTRYL 347
            TNSD    A L+  VT   EF+A +S S   + ++ +
Sbjct: 995  TNSDEEDEAELQLLVTEILEFQALYSASLRRMRSKLI 1031


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -3

Query: 405 KLRNGQERILLSHRKMQLIQDTESLN*V-QIHYALLQIHERLLQKLLSSQICHYRS*YTN 229
           KL N +ER+LL  R   L  DTE L    +  Y L    E ++   +  ++ HY+  + N
Sbjct: 730 KLLNQEERLLLLKRGDVLTFDTEELEAYGKTLYPLYITKEDIVCLEIDDRVFHYKFAFLN 789


>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +3

Query: 462 GRSSSAVTCCSRAKREACTHPYIQIYSNIVTVVNRFNIK*EEN 590
           G+S  AV    R   +      +QIY    T+ N+  ++ +EN
Sbjct: 15  GKSDLAVQLAKRFGSQVINADSMQIYRGFDTITNKITVEEQEN 57


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/42 (26%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
 Frame = +1

Query: 493 AEP--SARHALTHTYKFIAILSRLLTDSISNEKKIKLLSVMQ 612
           AEP  ++ H+L   + F+ +LS  +TD +S+++ + ++ + +
Sbjct: 286 AEPQLTSIHSLRDDWSFLTLLSDGITDVVSDDEVVDIIKLSE 327


>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +1

Query: 475 VLSR--AAAEPSARHALTHTYKFIAILSRLLTDSISNEKKIKLLSVM 609
           V+SR  AAA PS      H     + L+RLL  S+S + +I LL+ +
Sbjct: 391 VISRLSAAANPSLTSNSGHIPYRESKLTRLLQQSLSGQSQISLLATI 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,195,015
Number of Sequences: 5004
Number of extensions: 62348
Number of successful extensions: 167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)