Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_E10
(911 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0018 - 19298562-19299827 38 0.015
03_01_0574 + 4243019-4244284 35 0.10
08_01_0281 - 2290348-2290637,2290846-2291032 31 1.7
10_08_0497 - 18336819-18337140,18337226-18337360,18337579-183376... 29 5.1
08_02_0776 - 21083181-21083187,21083256-21083683,21083800-210840... 29 5.1
05_05_0220 + 23380290-23381581,23381997-23383458 28 9.0
03_05_0916 - 28762214-28762414,28763144-28763242,28763573-287639... 28 9.0
02_01_0438 + 3179627-3180280,3180933-3181156,3182339-3182495 28 9.0
>11_06_0018 - 19298562-19299827
Length = 421
Score = 37.5 bits (83), Expect = 0.015
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Frame = +1
Query: 394 VPKFARSSASLWRVMCDGRGPHWAGVAVLSRAAAEPSARHALTHTYKFIAILSRLLTDSI 573
V F R S L+ V D RG WAG++ + A E AR H+ ++RLL S+
Sbjct: 67 VAHFVRRSPQLFEVCRDSRGVMWAGLSPQAEALVEEEARLLEDHSRTAAEYVTRLLMISV 126
Query: 574 SNEKKI-KLLSVMQD--ISYGIKISW 642
I K+ +D + + K W
Sbjct: 127 DRRLAIDKIAHFRRDMGLPHDFKTRW 152
>03_01_0574 + 4243019-4244284
Length = 421
Score = 34.7 bits (76), Expect = 0.10
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Frame = +1
Query: 394 VPKFARSSASLWRVMCDGRGPHWAGVAVLSRAAAEPSARHALTHTYKFIAILSRLLTDSI 573
V F S L+ V D RG WAG++ + A E AR H+ ++RLL S+
Sbjct: 67 VAHFVSRSPQLFEVCRDSRGVMWAGLSPQAEALIEEEARLLEDHSRTAAEYVTRLLMMSV 126
Query: 574 SNEKKI-KLLSVMQD--ISYGIKISW 642
I K+ +D + + K W
Sbjct: 127 DRRLAIDKIAHFRRDMGLPHDFKTRW 152
>08_01_0281 - 2290348-2290637,2290846-2291032
Length = 158
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 427 WRVMCDGRGPHWAGVAVLSRAAAEPSARHALTHTYKFIAILSRL 558
WR G+ P W G VL AA S+RH + H+ + + + RL
Sbjct: 41 WRWQSGGQEPRWLGANVLLGDAAAMSSRHPV-HSTELLRVDYRL 83
>10_08_0497 -
18336819-18337140,18337226-18337360,18337579-18337673,
18337759-18337845,18337923-18338129,18338209-18338535,
18338711-18338803,18338861-18339175,18339283-18339792,
18339889-18339960,18341209-18341256,18341427-18341551,
18341640-18341661
Length = 785
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +3
Query: 222 VDNWCTNSDNGKFANLKAFVTAAREFEATHSESALNLMTRYLGLIASSCD 371
VD+WC +++GK ++++ + A R+ ES N ++ + S D
Sbjct: 118 VDSWCQGAEDGKIGSIRSILEAFRKACHYGEESGNNSAPKFSVMSGSVLD 167
>08_02_0776 -
21083181-21083187,21083256-21083683,21083800-21084048,
21084172-21084248,21084351-21084483
Length = 297
Score = 29.1 bits (62), Expect = 5.1
Identities = 18/76 (23%), Positives = 37/76 (48%)
Frame = -2
Query: 499 ARLQHVTALLLLPNEDLAHHTLLSTKKLKNAQTSERPGENIVKSQEDAINPRYRVIKLSA 320
A+ +++ ++L + LA H+L S+ + A+ SE ++ + PR+ +
Sbjct: 164 AQGRYLQSVLRRAQQVLADHSLASSPEAATAELSELASAVDIECMSSSSPPRHHRQSAAT 223
Query: 319 DSLCVASNSRAAVTKA 272
DS ++S A +KA
Sbjct: 224 DSCVTTTSSSEAESKA 239
>05_05_0220 + 23380290-23381581,23381997-23383458
Length = 917
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 391 PGENIVKSQEDAINPRYRVIKLSADSL 311
PG N+ DA+ PR R + LSA+SL
Sbjct: 100 PGNNLSGPLPDALPPRARALDLSANSL 126
>03_05_0916 - 28762214-28762414,28763144-28763242,28763573-28763998,
28764259-28764501,28764706-28764927,28765392-28765721,
28767380-28767800,28768292-28768404,28769224-28769367,
28769439-28769570,28769802-28770013,28770983-28771505
Length = 1021
Score = 28.3 bits (60), Expect = 9.0
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Frame = -2
Query: 511 ASRLARLQHVTALLLLPNEDLAHHTLLSTKKLKNAQTSERPGENIVKS---------QED 359
+ R R+ AL LLP + +L + L + R ++K+ +ED
Sbjct: 900 SQRWDRINGAQALRLLPRDTKLQDLVLFLEPLLRNSSEHRRNYMVIKNLIFRANLQVKED 959
Query: 358 AINPRYRVIKLSADSLCVASNSRAA 284
R V+K+ DS+C + R A
Sbjct: 960 LYKRRQAVLKIDGDSMCSLCHKRIA 984
>02_01_0438 + 3179627-3180280,3180933-3181156,3182339-3182495
Length = 344
Score = 28.3 bits (60), Expect = 9.0
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Frame = +3
Query: 354 IASSCDLTIFSPGRSEVCAFFSFFVESNV*WARSSLGRS-SSAVTCCSRAKRE--ACTHP 524
+A+ CDL + P ++EVC F V S + G + +A+ R R+ A HP
Sbjct: 150 LAAVCDLNVHLPLQAEVCPFGLAPVTSTA--IQMVFGDTVVAAIMEARRLSRDQYASNHP 207
Query: 525 YIQIYSNIVTVVNRFNIK*EENKITICNAGYFIWYQNQLARIIS 656
+I +++ V ++ ++N++ +C G I +QL + S
Sbjct: 208 AGKIGKSLIFKVK--DVMKKQNELPLCKEGDMI--MDQLTELTS 247
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,245,514
Number of Sequences: 37544
Number of extensions: 387524
Number of successful extensions: 924
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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