Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_E09
         (963 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    28   0.15 
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239...    30   2.4  
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969...    30   3.2  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   4.2  
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27...    29   5.5  
03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776     27   6.4  
01_05_0687 + 24288648-24292746,24293737-24293844,24294333-242944...    29   7.3  
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504...    28   9.6  

>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 27.9 bits (59), Expect(2) = 0.15
 Identities = 15/64 (23%), Positives = 19/64 (29%)
 Frame = -3

Query: 406 PPXPPPGPGXXKGSXVXXXXWXXPPMXGSREXIAPPAXPNXAXFSPXXXAGGXPQXPKGX 227
           PP PPP P               PP+  +     PPA P     +        P  P+  
Sbjct: 713 PPPPPPPPANRSNGPSAPAPPLPPPLPAAANKRNPPAPPPPPLMTGKKAPAPPPPPPQAP 772

Query: 226 XTXG 215
              G
Sbjct: 773 KPPG 776



 Score = 25.0 bits (52), Expect(2) = 0.15
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 463 PQNPTXXPXGXGGLXKXXKPPXPPPGP 383
           P++ +  P G     K   PP PPP P
Sbjct: 672 PRSSSRTPTGAATSSKGPPPPPPPPLP 698



 Score = 24.2 bits (50), Expect(2) = 9.8
 Identities = 18/66 (27%), Positives = 20/66 (30%), Gaps = 4/66 (6%)
 Frame = -3

Query: 406 PPXPPPGPGXXKGSXVXXXXWXXPP----MXGSREXIAPPAXPNXAXFSPXXXAGGXPQX 239
           PP PPP P   + +         PP        R   APP  P              PQ 
Sbjct: 712 PPPPPPPPPANRSNGPSAPAPPLPPPLPAAANKRNPPAPPPPPLMTGKKAPAPPPPPPQA 771

Query: 238 PKGXXT 221
           PK   T
Sbjct: 772 PKPPGT 777



 Score = 22.2 bits (45), Expect(2) = 9.8
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = -3

Query: 463 PQNPTXXPXGXGGLXKXXKPPXPPPGP 383
           P      P   G   K   PP PPP P
Sbjct: 646 PNRLVPPPPAPGIGNKFPAPPPPPPPP 672


>06_02_0298 +
           13921310-13921834,13921923-13922063,13923601-13923951,
           13924071-13924130,13924261-13924380,13924569-13924718
          Length = 448

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -3

Query: 406 PPXPPPGPGXXKGSXVXXXXWXXPPMXGSREXIAPP 299
           PP PPP P   +        W  P M  SR  + PP
Sbjct: 274 PPPPPPSPAPIQHFARPLHVWGHPTMDPSRVPVWPP 309


>01_06_1678 -
           39095986-39096205,39096400-39096477,39096578-39096949,
           39097374-39097671,39097867-39098077,39098331-39099023
          Length = 623

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -1

Query: 312 P*HPPHXPXKPXFHPPXXXGXGPXPP 235
           P  PPH P  P  HPP      P PP
Sbjct: 121 PPPPPHPPEDPPPHPPHPPDHPPPPP 146


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 20/70 (28%), Positives = 23/70 (32%), Gaps = 5/70 (7%)
 Frame = +3

Query: 666 APRPGXPKXWXPXSXGRXXPD-----GXXRXSXXFPPXXGPPRGAXPXPAXXXFPGXXSP 830
           A RP  P    P   GR  P           +   PP   PP+ A   P     P    P
Sbjct: 278 AARPASPSPSLPLPPGRESPSRPQSIAAAAVASPAPPPPPPPKPAAAAPPPPPPPKAAPP 337

Query: 831 LPPXRGXCXP 860
            PP +G   P
Sbjct: 338 PPPPKGPPPP 347


>12_01_0033 -
           272848-272943,274026-274169,274264-274375,274521-274702,
           274781-274912,275038-276330,279841-280545,280649-280695,
           280787-280865
          Length = 929

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 14/42 (33%), Positives = 15/42 (35%)
 Frame = +3

Query: 723 PDGXXRXSXXFPPXXGPPRGAXPXPAXXXFPGXXSPLPPXRG 848
           P      +   PP    P GA P P     PG   P PP  G
Sbjct: 603 PSATANTASALPPPPPRPPGAPPPPPPPGKPGGPPPPPPRPG 644


>03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776
          Length = 429

 Score = 26.6 bits (56), Expect(2) = 6.4
 Identities = 17/59 (28%), Positives = 20/59 (33%)
 Frame = -3

Query: 406 PPXPPPGPGXXKGSXVXXXXWXXPPMXGSREXIAPPAXPNXAXFSPXXXAGGXPQXPKG 230
           PP P PG G  +G          P   G+     PP+ P      P    G  P  P G
Sbjct: 206 PPLPSPGAGAPRGGSATPA--MIPGHPGAFYPFPPPSLPG---VGPPRGGGAIPGLPAG 259



 Score = 20.6 bits (41), Expect(2) = 6.4
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -3

Query: 409 KPPXPPPGP 383
           +PP PPP P
Sbjct: 193 RPPTPPPTP 201


>01_05_0687 +
           24288648-24292746,24293737-24293844,24294333-24294442,
           24295208-24295282
          Length = 1463

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 17/59 (28%), Positives = 20/59 (33%)
 Frame = -3

Query: 463 PQNPTXXPXGXGGLXKXXKPPXPPPGPGXXKGSXVXXXXWXXPPMXGSREXIAPPAXPN 287
           P  PT  P            P PPP PG              PP+ G+     PPA P+
Sbjct: 34  PSLPTDAPPPEPSPQPHHATPIPPPSPGQATEGWPRAEE-PQPPIGGTPGAAGPPAPPS 91


>07_01_0674 +
           5047503-5047646,5047808-5047901,5048743-5048828,
           5049380-5049429,5049517-5049586,5049668-5049749,
           5049867-5050267,5050414-5050941,5051823-5052044
          Length = 558

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 14/44 (31%), Positives = 14/44 (31%)
 Frame = -3

Query: 463 PQNPTXXPXGXGGLXKXXKPPXPPPGPGXXKGSXVXXXXWXXPP 332
           P  P   P    G      PP PPP PG      V       PP
Sbjct: 232 PPPPPPKPANIAGAPGLPLPPPPPPPPGPPPREIVPGQTLLPPP 275


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,796,832
Number of Sequences: 37544
Number of extensions: 251141
Number of successful extensions: 1102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2788108120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)