Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_E09
(963 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 34 0.17
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 31 0.92
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 31 1.6
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.6
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 1.9
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 1.9
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 1.9
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 29 3.7
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 29 3.7
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 29 3.7
Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical pr... 29 6.5
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 6.5
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 6.5
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 6.5
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 6.5
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical pr... 28 8.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 8.6
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 8.6
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 33.9 bits (74), Expect = 0.17
Identities = 28/103 (27%), Positives = 30/103 (29%)
Frame = -1
Query: 822 GXPGXXXGXEXGXPPGGXXPXGEXAXNXXXXRXGXXGPXXXGXXXXXARXGGXXPREKPX 643
G PG PPG P G + G G GG P P
Sbjct: 199 GVPGPDGDAGSPPPPGPPGPPGPPGNDGQPGAPGQDGQPGAPGTNTVNSPGGPGPAGPPG 258
Query: 642 XXXPFXGXGPXXALXAKXXPPXXPPXPXGNPXTPLGGAXTXXP 514
P G A A+ PP PP P GN P G P
Sbjct: 259 PPGPPGQDGSGGA--AQPGPPG-PPGPPGNDGQPGGPGQPGGP 298
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 31.5 bits (68), Expect = 0.92
Identities = 25/103 (24%), Positives = 25/103 (24%)
Frame = -1
Query: 822 GXPGXXXGXEXGXPPGGXXPXGEXAXNXXXXRXGXXGPXXXGXXXXXARXGGXXPREKPX 643
G G PPG P G G GP G P P
Sbjct: 173 GPDGEAGSPAAPSPPGPPGPPGPAGPAGNDGAAGTPGPDGPAGESTYPEPAGPGPAGPPG 232
Query: 642 XXXPFXGXGPXXALXAKXXPPXXPPXPXGNPXTPLGGAXTXXP 514
P G P PP P G P P G T P
Sbjct: 233 PAGPPGPDGASPTAAPGAAGPPGPPGPAGAPG-PDGNPGTAGP 274
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 30.7 bits (66), Expect = 1.6
Identities = 28/103 (27%), Positives = 29/103 (28%)
Frame = -1
Query: 822 GXPGXXXGXEXGXPPGGXXPXGEXAXNXXXXRXGXXGPXXXGXXXXXARXGGXXPREKPX 643
G G PPG P G + G GP A G P
Sbjct: 175 GEAGSPAAPSPPGPPGPSGPAGPAGNDGAAGTPGPDGPAGESTYPEPAAPGPAGPPGPAG 234
Query: 642 XXXPFXGXGPXXALXAKXXPPXXPPXPXGNPXTPLGGAXTXXP 514
P G P A A P PP P G P P G T P
Sbjct: 235 PPGP-DGASPTAAPGAAGPP--GPPGPAGAPG-PDGNPGTAGP 273
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Frame = +3
Query: 663 SAPRPGXPKXWXPXSXGRXXPDGXXRXSXXFPPXXGPPRGAXPXPAXXXFP---GXXSPL 833
S P P P + G P PP PP G+ P P P G SP
Sbjct: 271 SPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 330
Query: 834 PPXR 845
PP R
Sbjct: 331 PPPR 334
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Frame = +3
Query: 663 SAPRPGXPKXWXPXSXGRXXPDGXXRXSXXFPPXXGPPRGAXPXPAXXXFP---GXXSPL 833
S P P P + G P PP PP G+ P P P G SP
Sbjct: 292 SPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 351
Query: 834 PPXR 845
PP R
Sbjct: 352 PPPR 355
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.7 bits (66), Expect = 1.6
Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Frame = +3
Query: 663 SAPRPGXPKXWXPXSXGRXXPDGXXRXSXXFPPXXGPPRGAXPXPAXXXFP---GXXSPL 833
S P P P + G P PP PP G+ P P P G SP
Sbjct: 277 SPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPP 336
Query: 834 PPXR 845
PP R
Sbjct: 337 PPPR 340
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/62 (27%), Positives = 20/62 (32%)
Frame = +3
Query: 654 PLXSAPRPGXPKXWXPXSXGRXXPDGXXRXSXXFPPXXGPPRGAXPXPAXXXFPGXXSPL 833
P+ P P P P G P PP PP G P PG +P+
Sbjct: 737 PITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPM 796
Query: 834 PP 839
P
Sbjct: 797 AP 798
Score = 25.8 bits (54), Expect(2) = 1.9
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -3
Query: 406 PPXPPPGPGXXKG 368
PP PPP PG KG
Sbjct: 770 PPPPPPPPGGFKG 782
Score = 23.0 bits (47), Expect(2) = 1.9
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = -3
Query: 454 PTXXPXGXGGLXKXXKPPXPPPG 386
P P G + PP PPPG
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPPG 766
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/62 (27%), Positives = 20/62 (32%)
Frame = +3
Query: 654 PLXSAPRPGXPKXWXPXSXGRXXPDGXXRXSXXFPPXXGPPRGAXPXPAXXXFPGXXSPL 833
P+ P P P P G P PP PP G P PG +P+
Sbjct: 737 PITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPM 796
Query: 834 PP 839
P
Sbjct: 797 AP 798
Score = 25.8 bits (54), Expect(2) = 1.9
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -3
Query: 406 PPXPPPGPGXXKG 368
PP PPP PG KG
Sbjct: 770 PPPPPPPPGGFKG 782
Score = 23.0 bits (47), Expect(2) = 1.9
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = -3
Query: 454 PTXXPXGXGGLXKXXKPPXPPPG 386
P P G + PP PPPG
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPPG 766
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/62 (27%), Positives = 20/62 (32%)
Frame = +3
Query: 654 PLXSAPRPGXPKXWXPXSXGRXXPDGXXRXSXXFPPXXGPPRGAXPXPAXXXFPGXXSPL 833
P+ P P P P G P PP PP G P PG +P+
Sbjct: 320 PITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPM 379
Query: 834 PP 839
P
Sbjct: 380 AP 381
Score = 25.8 bits (54), Expect(2) = 1.9
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -3
Query: 406 PPXPPPGPGXXKG 368
PP PPP PG KG
Sbjct: 353 PPPPPPPPGGFKG 365
Score = 23.0 bits (47), Expect(2) = 1.9
Identities = 9/23 (39%), Positives = 10/23 (43%)
Frame = -3
Query: 454 PTXXPXGXGGLXKXXKPPXPPPG 386
P P G + PP PPPG
Sbjct: 327 PPPPPGGLPPISGGPPPPPPPPG 349
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 29.5 bits (63), Expect = 3.7
Identities = 26/103 (25%), Positives = 28/103 (27%)
Frame = -1
Query: 822 GXPGXXXGXEXGXPPGGXXPXGEXAXNXXXXRXGXXGPXXXGXXXXXARXGGXXPREKPX 643
G P G PPG P G G G G G P P
Sbjct: 189 GSPAGPSGPGPAGPPGPAGPPGNDGQPGQPGGPGQDGASSAGGE------AGPGPAGPPG 242
Query: 642 XXXPFXGXGPXXALXAKXXPPXXPPXPXGNPXTPLGGAXTXXP 514
P G + A P PP P G P + G T P
Sbjct: 243 PAGPAGPDGQSGSGSAGGPGPKGPPGPAGQPGSD-GNPGTAGP 284
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 29.5 bits (63), Expect = 3.7
Identities = 24/81 (29%), Positives = 24/81 (29%)
Frame = +3
Query: 597 PXGPPKXXXRXRGXXXXVFPLXSAPRPGXPKXWXPXSXGRXXPDGXXRXSXXFPPXXGPP 776
P GPP F P G P GR P F GPP
Sbjct: 275 PYGPPHPMHHPYAMMPPPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHF--GMGPP 332
Query: 777 RGAXPXPAXXXFPGXXSPLPP 839
RG P P F G P PP
Sbjct: 333 RGFMPPPHPMMFRG--GPYPP 351
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Frame = -1
Query: 318 GXP*HPPHXPXKPXFHP----PXXXGXGPXPPR 232
G P H P+ P P HP P G P PPR
Sbjct: 269 GPPPHHPYGPPHPMHHPYAMMPPPFGFFPPPPR 301
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 29.5 bits (63), Expect = 3.7
Identities = 24/81 (29%), Positives = 24/81 (29%)
Frame = +3
Query: 597 PXGPPKXXXRXRGXXXXVFPLXSAPRPGXPKXWXPXSXGRXXPDGXXRXSXXFPPXXGPP 776
P GPP F P G P GR P F GPP
Sbjct: 275 PYGPPHPMHHPYAMMPPPFGFFPPPPRGHFPPPPPHFMGRGMPPPFMPPPPHF--GMGPP 332
Query: 777 RGAXPXPAXXXFPGXXSPLPP 839
RG P P F G P PP
Sbjct: 333 RGFMPPPHPMMFRG--GPYPP 351
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Frame = -1
Query: 318 GXP*HPPHXPXKPXFHP----PXXXGXGPXPPR 232
G P H P+ P P HP P G P PPR
Sbjct: 269 GPPPHHPYGPPHPMHHPYAMMPPPFGFFPPPPR 301
>Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical
protein F55C10.3 protein.
Length = 266
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Frame = -1
Query: 321 PGXP*HPPHXPXKPXFHPP-XXXGXGPXPPRXP 226
PG P HPP P P PP GP P P
Sbjct: 93 PGNPGHPPQQPCDPITPPPCQPCPQGPPGPPGP 125
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 28.7 bits (61), Expect = 6.5
Identities = 25/96 (26%), Positives = 29/96 (30%)
Frame = -1
Query: 822 GXPGXXXGXEXGXPPGGXXPXGEXAXNXXXXRXGXXGPXXXGXXXXXARXGGXXPREKPX 643
G G G + PG P G + G P G A + P
Sbjct: 90 GGGGGGGGCDGCCNPGPPGPGGSPGKPGKPGKPG--APGAPGNPGKGASAPCEPVTQPPC 147
Query: 642 XXXPFXGXGPXXALXAKXXPPXXPPXPXGNPXTPLG 535
P GP A P PP P GNP +P G
Sbjct: 148 QPCPGGPPGP-----AGPAGPPGPPGPDGNPGSPAG 178
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 28.7 bits (61), Expect = 6.5
Identities = 25/96 (26%), Positives = 29/96 (30%)
Frame = -1
Query: 822 GXPGXXXGXEXGXPPGGXXPXGEXAXNXXXXRXGXXGPXXXGXXXXXARXGGXXPREKPX 643
G G G + PG P G + G P G A + P
Sbjct: 90 GGGGGGGGCDGCCNPGPPGPGGSPGKPGKPGKPG--APGAPGNPGKGASAPCEPVTQPPC 147
Query: 642 XXXPFXGXGPXXALXAKXXPPXXPPXPXGNPXTPLG 535
P GP A P PP P GNP +P G
Sbjct: 148 QPCPGGPPGP-----AGPAGPPGPPGPDGNPGSPAG 178
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 28.7 bits (61), Expect = 6.5
Identities = 25/96 (26%), Positives = 29/96 (30%)
Frame = -1
Query: 822 GXPGXXXGXEXGXPPGGXXPXGEXAXNXXXXRXGXXGPXXXGXXXXXARXGGXXPREKPX 643
G G G + PG P G + G P G A + P
Sbjct: 90 GGGGGGGGCDGCCNPGPPGPGGSPGKPGKPGKPG--APGAPGNPGKGASAPCEPVTQPPC 147
Query: 642 XXXPFXGXGPXXALXAKXXPPXXPPXPXGNPXTPLG 535
P GP A P PP P GNP +P G
Sbjct: 148 QPCPGGPPGP-----AGPAGPPGPPGPDGNPGSPAG 178
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 28.7 bits (61), Expect = 6.5
Identities = 25/96 (26%), Positives = 29/96 (30%)
Frame = -1
Query: 822 GXPGXXXGXEXGXPPGGXXPXGEXAXNXXXXRXGXXGPXXXGXXXXXARXGGXXPREKPX 643
G G G + PG P G + G P G A + P
Sbjct: 90 GGGGGGGGCDGCCNPGPPGPGGSPGKPGKPGKPG--APGAPGNPGKGASAPCEPVTQPPC 147
Query: 642 XXXPFXGXGPXXALXAKXXPPXXPPXPXGNPXTPLG 535
P GP A P PP P GNP +P G
Sbjct: 148 QPCPGGPPGP-----AGPAGPPGPPGPDGNPGSPAG 178
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
protein F12F6.6 protein.
Length = 1126
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Frame = +1
Query: 655 PWXXPPXPGXXXXGPXXXRA---GXAXTGXXGIPXXFPPXXXPPGGXXXFXP 801
P P P GP RA G + G+P FPP PG F P
Sbjct: 249 PGSYPSGPADIPQGPGMPRAFPPGASAPVAPGMPGAFPPGQGGPGMPGSFPP 300
>Z68219-2|CAA92476.1| 300|Caenorhabditis elegans Hypothetical
protein T05A1.2 protein.
Length = 300
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = -1
Query: 321 PGXP*HPPHXPXKPXFHPPXXXGXGPXPPRXP 226
PG P PP P +P PP P PP P
Sbjct: 127 PGHPGKPPQSPCEP-LTPPPCPACPPGPPGAP 157
>Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical
protein C09G5.5 protein.
Length = 317
Score = 28.3 bits (60), Expect = 8.6
Identities = 25/95 (26%), Positives = 28/95 (29%), Gaps = 1/95 (1%)
Frame = -1
Query: 822 GXPGXXXGXEXGXPPGGXXPXGEXAXNXXXXRXGXXGPXXXGXXXXXARXGGXXPREKPX 643
G PG PPG P G+ G P G +R G P +P
Sbjct: 155 GNPGAPAHGGGQGPPGPPGPAGDAGSPGQAGAPG--NPGRPGQSGQRSR-GLPGPSGRPG 211
Query: 642 XXXPFXGXG-PXXALXAKXXPPXXPPXPXGNPXTP 541
P G P P PP P G P P
Sbjct: 212 PQGPPGAPGQPGSGSTPGPAGPPGPPGPNGQPGHP 246
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.3 bits (60), Expect = 8.6
Identities = 20/65 (30%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Frame = +3
Query: 675 PGXPKXWXPXSXGRXXPDGXXRXSXXFPPXXGPPRGAXPXPA---XXXFPGXXSPLPPXR 845
PG P P R P G PP P G P P PG P PP R
Sbjct: 311 PGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSR 370
Query: 846 GXCXP 860
P
Sbjct: 371 PPAPP 375
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.3 bits (60), Expect = 8.6
Identities = 20/65 (30%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Frame = +3
Query: 675 PGXPKXWXPXSXGRXXPDGXXRXSXXFPPXXGPPRGAXPXPA---XXXFPGXXSPLPPXR 845
PG P P R P G PP P G P P PG P PP R
Sbjct: 321 PGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSR 380
Query: 846 GXCXP 860
P
Sbjct: 381 PPAPP 385
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,033,755
Number of Sequences: 27780
Number of extensions: 195994
Number of successful extensions: 889
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2490012644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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