Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_E08
(879 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 105 8e-24
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 95 1e-20
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 65 1e-11
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 64 2e-11
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 58 1e-09
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 58 2e-09
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 58 2e-09
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 57 4e-09
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 57 4e-09
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 56 9e-09
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 54 4e-08
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 54 4e-08
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 53 5e-08
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 52 1e-07
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 52 1e-07
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 51 2e-07
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 51 2e-07
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 50 4e-07
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 49 8e-07
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 49 1e-06
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 48 1e-06
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 45 1e-05
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 44 2e-05
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 44 2e-05
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 44 3e-05
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 42 1e-04
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 42 2e-04
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 41 2e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 41 2e-04
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 41 2e-04
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 41 3e-04
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 39 0.001
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 39 0.001
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 39 0.001
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 36 0.006
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 36 0.006
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 34 0.023
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 33 0.071
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 31 0.16
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.66
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 29 1.2
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 105 bits (252), Expect = 8e-24
Identities = 49/81 (60%), Positives = 59/81 (72%)
Frame = +2
Query: 230 VXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 409
V VGNIPYE EE++ DIF + GPV SF+LV D E+G+PKGYGFCEY D TA SA+RNL
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 410 NGYEIGGRSLRVDNACTEKSR 472
N Y+ G R LRVD ++ R
Sbjct: 67 NNYDAGTRRLRVDFPTADQIR 87
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 95.1 bits (226), Expect = 1e-20
Identities = 41/73 (56%), Positives = 55/73 (75%)
Frame = +2
Query: 230 VXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 409
V VGNIPY+ +E+++ +IF++VGPV +FKLV D ETG KGYGFCE+ D ET A+R L
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 410 NGYEIGGRSLRVD 448
N E+G R +RV+
Sbjct: 69 NNSELGPRKIRVE 81
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 64.9 bits (151), Expect = 1e-11
Identities = 25/75 (33%), Positives = 50/75 (66%)
Frame = +2
Query: 230 VXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 409
+ VGN+P+ ++ L D+F+++G V+ ++ ++ TG+ KG+G +++++ A S++ L
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYE-PTGRSKGFGVVQFENENDAASSIEKL 340
Query: 410 NGYEIGGRSLRVDNA 454
NGY GGR L++ A
Sbjct: 341 NGYRYGGRPLQLSYA 355
Score = 41.9 bits (94), Expect = 1e-04
Identities = 23/70 (32%), Positives = 37/70 (52%)
Frame = +2
Query: 224 RSVXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 403
R V VGN+ Y+ +LK+ +VG VL+ + + + G KG EY E A +A++
Sbjct: 66 RRVYVGNLSYQVRWFELKEFMGQVGNVLNCE-ILNLPNGLSKGCAIIEYSTAEEARTAIK 124
Query: 404 NLNGYEIGGR 433
L+ + GR
Sbjct: 125 TLSNQKFMGR 134
Score = 39.1 bits (87), Expect = 8e-04
Identities = 19/67 (28%), Positives = 36/67 (53%)
Frame = +2
Query: 245 IPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLNGYEI 424
+PY + LKD+F + G V+ + ++E G+ +G G + A+ A++ L+ +
Sbjct: 190 LPYNVRWQDLKDLFRQAGSVIRADIQMNQE-GRSRGIGIVVMSSMKEAMHAIQMLHNTDF 248
Query: 425 GGRSLRV 445
GR+L V
Sbjct: 249 MGRTLEV 255
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 64.5 bits (150), Expect = 2e-11
Identities = 27/79 (34%), Positives = 49/79 (62%)
Frame = +2
Query: 230 VXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 409
+ +GN+ ++ E+ + +FSE G + LV D+ETGK KG+ F +Y+DQ + + A+ N+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 410 NGYEIGGRSLRVDNACTEK 466
++ R +RVD+ + K
Sbjct: 93 TNVKLLDRLVRVDHVASYK 111
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 58.4 bits (135), Expect = 1e-09
Identities = 31/93 (33%), Positives = 49/93 (52%)
Frame = +2
Query: 236 VGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLNG 415
VGN+ + +E L FSE ++ K+V DRE GK +G+GF +KD + L A R NG
Sbjct: 34 VGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAWREKNG 92
Query: 416 YEIGGRSLRVDNACTEKSRMEMQALMQGPQVEN 514
IG R +++ A ++ E+ ++ N
Sbjct: 93 KYIGSRPVKLSRATSDVKPNEVNEKTIDSKIRN 125
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 58.0 bits (134), Expect = 2e-09
Identities = 30/84 (35%), Positives = 45/84 (53%)
Frame = +2
Query: 227 SVXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 406
+V + N+ E TE++ D+F + G + S LV D + KP+G+GF Y + E A A+
Sbjct: 262 NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDE 320
Query: 407 LNGYEIGGRSLRVDNACTEKSRME 478
LN E G+ L V A + R E
Sbjct: 321 LNDKEYKGKKLYVGRAQKKHEREE 344
Score = 49.2 bits (112), Expect = 8e-07
Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 6/99 (6%)
Frame = +2
Query: 212 DKSMRSVXVGNIPYE----ATEEK-LKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKD 376
D S+R + GN+ + A + K L D FS G +LS K+ D E G KGYGF +
Sbjct: 159 DPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDS 217
Query: 377 QETALSAMRNLNGYEIGGRSLRVDNACTEKSRM-EMQAL 490
E+A +A+ ++NG + + + V + + + R +++AL
Sbjct: 218 VESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEAL 256
Score = 45.6 bits (103), Expect = 9e-06
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +2
Query: 227 SVXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 406
S+ VG + TE L ++F+ +GPV S ++ D T + GY + + + E A+
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 407 LNGYEIGGRSLRV 445
LN I GR R+
Sbjct: 141 LNYTLIKGRPCRI 153
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 57.6 bits (133), Expect = 2e-09
Identities = 27/78 (34%), Positives = 47/78 (60%)
Frame = +2
Query: 236 VGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLNG 415
VG +P + TEE+ ++ F++ G VL L+ D++TG+P+G+GF Y + E+A+ A +
Sbjct: 251 VGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTY-ENESAVEATMSQPY 309
Query: 416 YEIGGRSLRVDNACTEKS 469
I G+ + V A + S
Sbjct: 310 ITIHGKPVEVKRATPKAS 327
Score = 47.2 bits (107), Expect = 3e-06
Identities = 20/69 (28%), Positives = 38/69 (55%)
Frame = +2
Query: 194 EEQSIMDKSMRSVXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYK 373
EE S ++ + +G + +E T++ L+D F + G VL ++ D TG+ +G+GF +K
Sbjct: 153 EETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFK 212
Query: 374 DQETALSAM 400
+ + M
Sbjct: 213 NPKCVNEVM 221
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 56.8 bits (131), Expect = 4e-09
Identities = 33/104 (31%), Positives = 54/104 (51%)
Frame = +2
Query: 182 SKEKEEQSIMDKSMRSVXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGF 361
SK QS + + VGN+ +E T+ LK+ F +VG + +L+ +TGK KG+GF
Sbjct: 214 SKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGF 273
Query: 362 CEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQALM 493
++ D +T + AM E+G S R++ RM ++ M
Sbjct: 274 VDFPDIDTCMKAM------ELGHNSWRLEYGEDRSKRMRNKSPM 311
Score = 26.6 bits (56), Expect = 4.7
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +2
Query: 191 KEEQSIMDKSMRS---VXVGNIPYEATEEKLKDIF 286
KEE ++S RS + VGN+ + T+E L D F
Sbjct: 91 KEEGESQEESKRSPWGIWVGNLSFHTTKEILTDFF 125
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 56.8 bits (131), Expect = 4e-09
Identities = 30/88 (34%), Positives = 51/88 (57%)
Frame = +2
Query: 218 SMRSVXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSA 397
S ++ V N+ ++ ++ L + FS+VGP+ +V + ETG+ +GYGF + E A A
Sbjct: 3 SNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRA 62
Query: 398 MRNLNGYEIGGRSLRVDNACTEKSRMEM 481
+ L ++ GR LR+D A T + R E+
Sbjct: 63 AKELKNKKLHGRILRLDFA-TPRKRSEV 89
Score = 44.0 bits (99), Expect = 3e-05
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = +2
Query: 197 EQSIMDKSMRSVXVGNIPYEATE-EKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYK 373
+++I + + + N+P+ + + L+ FS+ G V K+ + G+ G+ F K
Sbjct: 98 KKTIRQDNRPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIP-TKGGGRMCGFAFVWMK 156
Query: 374 DQETALSAMRNLNGYEIGGRSLRVDNACTE 463
D++ A AM +LNG EI GR + VD A ++
Sbjct: 157 DRKAAEEAMNSLNGTEIDGRPIAVDWAVSK 186
Score = 37.9 bits (84), Expect = 0.002
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +2
Query: 227 SVXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYK 373
+V V N+ +E TE++L + F + GP+ KLV D T + G GF +++
Sbjct: 278 TVFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFR 326
Score = 32.3 bits (70), Expect = 0.094
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2
Query: 338 GKPKGYGFCEYKDQETALSAMRNLNGYEI 424
G+ KG+GF ++ + AL A+R LNG EI
Sbjct: 536 GRSKGFGFMQFISHKYALMALRWLNGREI 564
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 55.6 bits (128), Expect = 9e-09
Identities = 26/74 (35%), Positives = 44/74 (59%)
Frame = +2
Query: 227 SVXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 406
+V VGN+ + ATE+ L F G + S +L D ++G+ KG+G+ + D ++A +
Sbjct: 367 TVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV-E 425
Query: 407 LNGYEIGGRSLRVD 448
+NG+ I GR R+D
Sbjct: 426 MNGHFIAGRPCRLD 439
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 53.6 bits (123), Expect = 4e-08
Identities = 26/92 (28%), Positives = 48/92 (52%)
Frame = +2
Query: 182 SKEKEEQSIMDKSMRSVXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGF 361
S + + ++D S + + N+P E+++ ++ G +LSF+L+ + G KG+ F
Sbjct: 297 SDDYAKNDVLD-SKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCF 355
Query: 362 CEYKDQETALSAMRNLNGYEIGGRSLRVDNAC 457
CE+K+ A A+ L+G + G L AC
Sbjct: 356 CEFKNPSDAEVAISGLDGKDTYGNKLHAQFAC 387
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 53.6 bits (123), Expect = 4e-08
Identities = 35/105 (33%), Positives = 55/105 (52%)
Frame = +2
Query: 236 VGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLNG 415
VGN+ ++ TE L D F E V S +LV D T + +G+G+ E++ +T LSA L+G
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADT-LSAALALSG 154
Query: 416 YEIGGRSLRVDNACTEKSRMEMQALMQGPQVENPYGDPVEPEKAP 550
++ GR +R+ A +S + G V P EP ++P
Sbjct: 155 EDLMGRPVRITVAEPRRS-FAREERSTGDWVRRGPLPPAEPAESP 198
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 53.2 bits (122), Expect = 5e-08
Identities = 25/74 (33%), Positives = 41/74 (55%)
Frame = +2
Query: 227 SVXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 406
++ V N+ + EE+L+D+F G + L D+ETG+ KG+ F Y D++ A+ A
Sbjct: 203 TLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDR 262
Query: 407 LNGYEIGGRSLRVD 448
L+GY LR +
Sbjct: 263 LDGYGWNNLILRCE 276
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 52.0 bits (119), Expect = 1e-07
Identities = 30/78 (38%), Positives = 41/78 (52%)
Frame = +2
Query: 230 VXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNL 409
+ V + EATEE+++D+F++ GPV + L DR TG KGY EY E A A+
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEK 71
Query: 410 NGYEIGGRSLRVDNACTE 463
N + L VD A E
Sbjct: 72 N-LSLLDEKLEVDFAFLE 88
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 51.6 bits (118), Expect = 1e-07
Identities = 23/70 (32%), Positives = 43/70 (61%)
Frame = +2
Query: 236 VGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLNG 415
V NI + T+E +K IF G + L D + + KG+G+ +Y++ +A +A+ +NG
Sbjct: 344 VSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPISARNALEKMNG 402
Query: 416 YEIGGRSLRV 445
+++ GR++RV
Sbjct: 403 FDLAGRNMRV 412
Score = 46.4 bits (105), Expect = 5e-06
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Frame = +2
Query: 212 DKSMRSVXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL 391
++ R+V V + T +L D F + GPV ++V D+ +G+ KG + E+ +++
Sbjct: 236 ERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQ 295
Query: 392 SAMRNLNGYEIGGRSLRVDNACTEKSRMEMQA--LMQGPQVENPY 520
+A+ L+G + G + V EK+R +A L + E P+
Sbjct: 296 AAIA-LSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPF 339
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 50.8 bits (116), Expect = 2e-07
Identities = 26/74 (35%), Positives = 42/74 (56%)
Frame = +2
Query: 224 RSVXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 403
+SV VGN+ Y T E+L+ F+ G V ++ D+ TG PKG+ + E+ + +A+
Sbjct: 55 QSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALL 114
Query: 404 NLNGYEIGGRSLRV 445
LNG + R L+V
Sbjct: 115 -LNGSMLHERPLKV 127
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 50.8 bits (116), Expect = 2e-07
Identities = 24/86 (27%), Positives = 46/86 (53%)
Frame = +2
Query: 185 KEKEEQSIMDKSMRSVXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFC 364
K+ E + K + VG +P+ E++++ FS+ GPVL ++ +R+TG K Y F
Sbjct: 92 KKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFI 151
Query: 365 EYKDQETALSAMRNLNGYEIGGRSLR 442
E++ + A ++ Y + G+ L+
Sbjct: 152 EFESLDVANVVAETMHNYLLYGKLLQ 177
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 50.0 bits (114), Expect = 4e-07
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Frame = +2
Query: 188 EKEEQSIMDKSMR---SVXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYG 358
+KE QS + S + V I E++L+ IFS+ G V +++ + T +G+G
Sbjct: 86 KKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFG 145
Query: 359 FCEYKDQETALSAMRNLNGYEIGGRSLRVDNA 454
F + E A SA+ NLN E GR L V A
Sbjct: 146 FLSFSTVEEATSAIDNLNSQEFYGRVLNVQKA 177
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 49.2 bits (112), Expect = 8e-07
Identities = 24/78 (30%), Positives = 42/78 (53%)
Frame = +2
Query: 215 KSMRSVXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALS 394
K V VGN+ + TEE++ +FS+ G + + DR T P G+ F EY + + AL
Sbjct: 29 KQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALD 88
Query: 395 AMRNLNGYEIGGRSLRVD 448
+++ ++ + R +R D
Sbjct: 89 SLKYISRTSLDERIIRAD 106
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 48.8 bits (111), Expect = 1e-06
Identities = 24/74 (32%), Positives = 39/74 (52%)
Frame = +2
Query: 227 SVXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 406
++ V NIP+ ++ L D F ++G + + + G +G F + E A ++
Sbjct: 203 AIVVKNIPFSLEKDTLLDHFKQLGIPRPYAFNYHYDNGIFRGLAFANFYRPEEAQVVVQT 262
Query: 407 LNGYEIGGRSLRVD 448
LNGYEI GR LRV+
Sbjct: 263 LNGYEINGRRLRVE 276
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 48.4 bits (110), Expect = 1e-06
Identities = 21/80 (26%), Positives = 45/80 (56%)
Frame = +2
Query: 227 SVXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 406
++ +GN+ + T+ L ++ + GPV++ + DR G+GFCE+ ++ A +
Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQI 71
Query: 407 LNGYEIGGRSLRVDNACTEK 466
LN ++ G+ +RV+ A ++
Sbjct: 72 LNQVKLFGKPIRVNRASQDR 91
Score = 45.2 bits (102), Expect = 1e-05
Identities = 26/84 (30%), Positives = 41/84 (48%)
Frame = +2
Query: 227 SVXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 406
++ VGN+ E L D FS +G ++ V E G+ KGYGF Y ETA +A+
Sbjct: 100 NLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEA 159
Query: 407 LNGYEIGGRSLRVDNACTEKSRME 478
+N + + + V A + + E
Sbjct: 160 MNNQFLMNKPITVSYAFKREGKGE 183
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 45.2 bits (102), Expect = 1e-05
Identities = 22/74 (29%), Positives = 39/74 (52%)
Frame = +2
Query: 227 SVXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 406
++ + NIP+ +E L +F+ + + + + G +G F + E A + ++
Sbjct: 233 AIVIKNIPFSLKKEVLFKVFTALDIPRPYAFNYHFDNGVFRGLAFANFHSPEEAKTVVQV 292
Query: 407 LNGYEIGGRSLRVD 448
LNGYEI GR LRV+
Sbjct: 293 LNGYEITGRRLRVE 306
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 44.4 bits (100), Expect = 2e-05
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +2
Query: 263 EEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLR 442
+ +L+D+FS G +LS L +G KGYGF ++ E A+ A LNG +G + +
Sbjct: 397 KSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIF 456
Query: 443 V 445
V
Sbjct: 457 V 457
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 44.4 bits (100), Expect = 2e-05
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +2
Query: 224 RSVXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 403
R V VGN+ +EA EE L F + G + ++V D +T KG+ + ++KD A+
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALL 329
Query: 404 NLNGYEI-GGRSLRVDNACTEKSR 472
LN ++ GR+LR+ A + K +
Sbjct: 330 -LNEKKMPEGRTLRIMRAKSTKPK 352
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 44.0 bits (99), Expect = 3e-05
Identities = 26/82 (31%), Positives = 40/82 (48%)
Frame = +2
Query: 209 MDKSMRSVXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETA 388
M++ +V VGN+ TE L + F G ++S L +E + Y F E+ + E A
Sbjct: 1 MERRKATVHVGNLAPSVTESLLYNAFIPFGEIISVAL-HRKEKAVDRSYAFVEFDEPEDA 59
Query: 389 LSAMRNLNGYEIGGRSLRVDNA 454
AM N+N + R +RV A
Sbjct: 60 KEAMENMNYSILCDRCIRVSPA 81
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 41.9 bits (94), Expect = 1e-04
Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Frame = +2
Query: 182 SKEKEEQSIMDKSMRSVXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKP----- 346
S++ + I ++ V N+ + +E+ + +F + LS + + +P
Sbjct: 605 SEKVGTEDIESLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLS 664
Query: 347 KGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 445
G+GF E+KD+ +A++AM +NG+ + G L +
Sbjct: 665 MGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEI 697
Score = 40.7 bits (91), Expect = 3e-04
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Frame = +2
Query: 173 MDXSKEKEEQSIMDKSMRSVXVGNIPYEATEEKLKDIFSEVGPVLSFKL--VFDRETGKP 346
+D + E +Q + + N+P+EAT++ ++ + G + S ++ FDR
Sbjct: 704 VDAAAEVRKQDSSKPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSA--- 760
Query: 347 KGYGFCEYKDQETALSAMRNLNGYEIGGRSL 439
+G+ F E+ A +AMR L + GR L
Sbjct: 761 RGFAFAEFVTAREAANAMRALKNTHLLGRHL 791
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 41.5 bits (93), Expect = 2e-04
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Frame = +2
Query: 203 SIMDKSMRSVX-VGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQ 379
S +++ + S+ + N+ ++ T E++ D+F GPV +L T + +G F Y++
Sbjct: 4 STVNQEVNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYENV 60
Query: 380 ETALSAMRNLNGYEIGGRSLRVDNACTEKSRMEMQAL 490
+ A A L+GY R L V E+++++ Q L
Sbjct: 61 QDARRACEKLSGYNFMDRYLVVHYYNPERAKVDGQDL 97
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 41.1 bits (92), Expect = 2e-04
Identities = 20/67 (29%), Positives = 37/67 (55%)
Frame = +2
Query: 185 KEKEEQSIMDKSMRSVXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFC 364
K K ++ + + VGN+P +++ E L+ F G V S ++ D+ +G+ KGY F
Sbjct: 79 KSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFV 138
Query: 365 EYKDQET 385
E+ + +T
Sbjct: 139 EFINPKT 145
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 41.1 bits (92), Expect = 2e-04
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = +2
Query: 227 SVXVGNIPYEATEEKLKDIFSEVGP-VLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 403
S+ VG++ + L F + P S K++ D TG + YGF + ++ A+
Sbjct: 183 SIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALM 242
Query: 404 NLNGYEIGGRSLRVDNACTEKSRMEMQA 487
++ GY GR LR+ + + KSR + A
Sbjct: 243 HMQGYLCQGRPLRI-SVASPKSRASIAA 269
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 41.1 bits (92), Expect = 2e-04
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +2
Query: 224 RSVXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL---S 394
R+V + +P ++E L + G V S K + D ET KGYGF ++++++AL S
Sbjct: 296 RNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEEEKSALICIS 355
Query: 395 AMRNLNGYE 421
AM L GY+
Sbjct: 356 AM-TLCGYQ 363
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 40.7 bits (91), Expect = 3e-04
Identities = 18/84 (21%), Positives = 42/84 (50%)
Frame = +2
Query: 197 EQSIMDKSMRSVXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKD 376
++ ++ +++ + + Y+ E ++ F+ GP+ ++V ++ TGK GY F ++
Sbjct: 91 DRHVIGDPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFER 150
Query: 377 QETALSAMRNLNGYEIGGRSLRVD 448
+ A + G + GR + VD
Sbjct: 151 ERDLKVAYKASAGLMLNGRRIVVD 174
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 38.7 bits (86), Expect = 0.001
Identities = 20/78 (25%), Positives = 40/78 (51%)
Frame = +2
Query: 212 DKSMRSVXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETAL 391
++ +R++ V N+ T+E + +IF G + + +++ KGY + EY + A
Sbjct: 95 EEPLRTILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAA 154
Query: 392 SAMRNLNGYEIGGRSLRV 445
+A+ +N E+ G L V
Sbjct: 155 NAVDKMNNAELDGEELFV 172
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 38.7 bits (86), Expect = 0.001
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +2
Query: 263 EEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLR 442
+E L+ IFS G ++S +++ D+ETG Y F E+ ++E+ A + I +
Sbjct: 257 DEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIH 316
Query: 443 VD 448
VD
Sbjct: 317 VD 318
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 38.7 bits (86), Expect = 0.001
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = +2
Query: 266 EKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRV 445
++L+++FS+ G + S L T KGYGF + A+ A+ LNG G + L V
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFV 494
Query: 446 DNACTEKSR 472
+ A + R
Sbjct: 495 NYAEKREDR 503
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 36.3 bits (80), Expect = 0.006
Identities = 29/128 (22%), Positives = 59/128 (46%), Gaps = 11/128 (8%)
Frame = +2
Query: 203 SIMDKSMRSVXVGNIPYEATEEKL----KDIFSEVGPVLSFKLVFDRETGKPKGYGFCEY 370
S+ K + + V ++ +EE+L KD F + GP+L K++ D + Y F ++
Sbjct: 72 SVRGKPVACLFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKD---WLQRPYSFVQF 128
Query: 371 KDQETALSAMRNLNGYEIGGRSLRVDNACTEK----SRMEMQALMQGPQVEN---PYGDP 529
++ + A A+ + GR +R++ A + S Q + ++N PYG+
Sbjct: 129 QNTDDASKALSEAQNTILDGRHIRIERAKVNRTIRISSAPHQPYITKKDIDNLLEPYGEV 188
Query: 530 VEPEKAPE 553
+ + P+
Sbjct: 189 EDVTEIPD 196
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 36.3 bits (80), Expect = 0.006
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = +2
Query: 227 SVXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 406
++ +G + TE ++ +++ +G + KL+ +R TG GY F E+ A SAM +
Sbjct: 94 TLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-S 152
Query: 407 LNGYEIGG 430
+N I G
Sbjct: 153 MNNKPIPG 160
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 34.3 bits (75), Expect = 0.023
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Frame = +2
Query: 230 VXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDR-ETGK---PKGYGFCEYKDQETALSA 397
V VG + + +++ +F VG V + F R G P G F + +QE A
Sbjct: 46 VFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDKA 105
Query: 398 MRNLNGYEIGGRSLRVDNA 454
+ LNG + R + V A
Sbjct: 106 IETLNGKTLDDREIVVQKA 124
Score = 31.5 bits (68), Expect = 0.16
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Frame = +2
Query: 299 PVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRNLNGYEIGGRSLRVDNACTEKSRME 478
P + ++ E + +G+GF + + E A+ +NG ++G +L V +A + +
Sbjct: 242 PYIIRRIKLRGEQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDK-- 299
Query: 479 MQALMQGPQVENPYGDPVE-PEKAPEAIS 562
Q + E +P+E E AP +S
Sbjct: 300 -----QNDENEKNENEPIEASESAPTNVS 323
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 32.7 bits (71), Expect = 0.071
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +2
Query: 227 SVXVGNIPYEATEEKLKDIFS-EVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 403
++ VGN+P +EE+LK +FS +VG +K + R G F E+++ A+ A++
Sbjct: 427 TIYVGNLPPSTSEEELKVLFSTQVG----YKRLCFRTKGNGP-MCFVEFENIPYAMEALK 481
Query: 404 NLNG 415
NL G
Sbjct: 482 NLQG 485
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 31.5 bits (68), Expect = 0.16
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 224 RSVXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDR 331
R+V +GN+P TE+++++ GP+ K+V +R
Sbjct: 206 RNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTER 241
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 29.5 bits (63), Expect = 0.66
Identities = 22/74 (29%), Positives = 36/74 (48%)
Frame = +2
Query: 224 RSVXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMR 403
+S+ V N+ E +L+ +F G + +++V E +G E+ D A A
Sbjct: 874 KSLGVTNVDGTVNEARLRSLFESYGKL--YRVVLHPEH---EG-AVVEFLDIHDAGKASL 927
Query: 404 NLNGYEIGGRSLRV 445
L G+EIGGR L +
Sbjct: 928 ALEGHEIGGRLLHI 941
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 28.7 bits (61), Expect = 1.2
Identities = 21/74 (28%), Positives = 34/74 (45%)
Frame = +2
Query: 227 SVXVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCEYKDQETALSAMRN 406
SV V NIP E ++ LK S GPV + E + KG + ++ + E A+ N
Sbjct: 316 SVFVKNIPPETSDVSLKSAMSIFGPVKAI------EFARRKGTAYVDFVNHECVQLAL-N 368
Query: 407 LNGYEIGGRSLRVD 448
+I +L ++
Sbjct: 369 KKTLQINNATLNIE 382
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,700,261
Number of Sequences: 5004
Number of extensions: 48724
Number of successful extensions: 204
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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