Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_E04
         (921 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116     40   0.004
01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869     40   0.004
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650     39   0.006
09_04_0569 + 18600750-18602117                                         31   1.7  
03_06_0096 - 31627332-31627570,31628467-31628743,31628963-316291...    28   9.1  
01_01_1190 + 9463973-9465732,9466210-9466440,9467664-9467793,946...    28   9.1  

>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
          Length = 147

 Score = 39.5 bits (88), Expect = 0.004
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +1

Query: 259 YNGLIHKKAVGVVENPDRKGFTVVYK-KAKATRKPAKNLIRRPFKAGARRSLYKVKRLLK 435
           ++GL +KK V +  +  +    V+   K K    PAK   +   +   R+    VK  + 
Sbjct: 48  HSGLANKKTVTIQPSGGKDAAVVLSTTKTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVS 107

Query: 436 ANHYRTDLCKATLRRASAILRS 501
            N+YR DL K  L R S++ RS
Sbjct: 108 DNYYRPDLTKPALARLSSVYRS 129



 Score = 33.1 bits (72), Expect = 0.32
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +3

Query: 192 NRNIKKPFSKEPNNVTNLHSFRLQRLDSQES 284
           N N K  F+KEPNN+ N+HS++   L ++++
Sbjct: 26  NSNAKVQFTKEPNNLYNVHSYKHSGLANKKT 56


>01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869
          Length = 145

 Score = 39.5 bits (88), Expect = 0.004
 Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
 Frame = +1

Query: 259 YNGLIHKKAVGVVENPDRKGFTVVYKKAKATR--KPAKNLIRRPFKAGARRSLYKVKRLL 432
           ++GL +KK V  V+    K   VV    K  +  KPA    +   +   R+    VK  +
Sbjct: 48  HSGLANKKTV-TVQPASGKETAVVLSTTKTEKQNKPASLYHKSVMRKEFRKMAKAVKNQV 106

Query: 433 KANHYRTDLCKATLRRASAILRS 501
             N+YR DL K  L R SA+ RS
Sbjct: 107 SDNYYRPDLTKPALARLSAVYRS 129



 Score = 33.9 bits (74), Expect = 0.18
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +3

Query: 192 NRNIKKPFSKEPNNVTNLHSFRLQRLDSQES 284
           N N K  FSKEPNN+ N+HS++   L ++++
Sbjct: 26  NGNAKVQFSKEPNNLYNVHSYKHSGLANKKT 56


>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
          Length = 147

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +1

Query: 259 YNGLIHKKAVGVVENPDRKGFTVVYK-KAKATRKPAKNLIRRPFKAGARRSLYKVKRLLK 435
           ++GL +KK V +  +  +    V+   K K    PAK   +   +   R+    VK  + 
Sbjct: 48  HSGLANKKTVTIQPSGVKDAAVVLSTTKTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVS 107

Query: 436 ANHYRTDLCKATLRRASAILRS 501
            N+YR DL K  L R S++ RS
Sbjct: 108 DNYYRPDLTKPALARLSSVYRS 129



 Score = 33.1 bits (72), Expect = 0.32
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +3

Query: 192 NRNIKKPFSKEPNNVTNLHSFRLQRLDSQES 284
           N N K  F+KEPNN+ N+HS++   L ++++
Sbjct: 26  NSNAKVQFTKEPNNLYNVHSYKHSGLANKKT 56


>09_04_0569 + 18600750-18602117
          Length = 455

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -1

Query: 201 YCDSSPRNALLLTDDHASSVXTDIFTGLNTISTHXNTYCAHNVCSTTXXAP 49
           Y D  P N LL  D H +    D+   L  +S   +T  + + CS T   P
Sbjct: 151 YRDLKPENVLLRADGHVTLTDFDLSRLLPPVSPSASTSTSSSSCSATSSPP 201


>03_06_0096 -
           31627332-31627570,31628467-31628743,31628963-31629118,
           31629205-31629381,31629543-31629745,31630680-31630995
          Length = 455

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 247 TPSGYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKAGAR 402
           +PS  + LIH  ++ V ++ +  G   V  + K  R PA    RR  +  AR
Sbjct: 2   SPSSSSSLIHGISISVSDDEEASGRVRVRVRRKRHRHPASAARRRLLRRAAR 53


>01_01_1190 +
           9463973-9465732,9466210-9466440,9467664-9467793,
           9468723-9468888,9469528-9469859,9470284-9470513,
           9471535-9471613,9471689-9471865
          Length = 1034

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 461 ARLPFVVLQPSSAPRGPLKQKRLRQPQPSRNN 556
           A  PF  +  +S+PR P   +  RQP P R++
Sbjct: 10  ASAPFPTIPAASSPRNPRAARPRRQPAPFRSS 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,161,710
Number of Sequences: 37544
Number of extensions: 314291
Number of successful extensions: 666
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)