Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_E03
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...    30   0.52 
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    29   1.2  
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    28   1.6  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    28   2.1  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    27   2.8  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.8  
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    27   4.8  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    26   6.4  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    26   6.4  
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    26   8.4  

>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = +3

Query: 654 LDVFAHNGEVTEKLIKNVDRKQLKLXKSLSI--H-KQTC 761
           LDVFAHN E  E+L   V  ++    +SLS+  H K+TC
Sbjct: 225 LDVFAHNVETVEELTPFVRDRRATYRQSLSVLKHVKKTC 263


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 688 SVTSPLCANTSSNVACVNKHFSMN 617
           S+TSPLC NTSS V     +F+ N
Sbjct: 385 SITSPLCLNTSSIVFNATVNFTRN 408


>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 768 EYSYGNELAPIKFDSKLEDEENTC 839
           +Y++  ++ PI+FD  L DEE TC
Sbjct: 468 DYNFNTQVLPIEFDGLL-DEERTC 490


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 408  DIPSVTEFDARNVEVCCLCLA 470
            D+PS TE     V  CC+CLA
Sbjct: 1438 DLPSFTEEKVSFVSFCCVCLA 1458


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +3

Query: 330 ICSEHFDHFINET 368
           IC+EHF+HF NE+
Sbjct: 323 ICNEHFEHFKNES 335


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +3

Query: 621 IEKCLLTQATLLDVFAHNGEVTEKLIKNVDRKQLKLXKSLSIHKQTCVIEYSYGNELAP 797
           +++  L+  TL DV   N +    LI   D        S ++H    +I  S+G  + P
Sbjct: 339 LDETELSSGTLNDVGCRNVQFLSSLISQQDLTFFYPFSSFTVHSNVRIIILSHGRSILP 397


>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 678 EVTEKLIKNVDRKQLKLXKSLSIHKQTCVIEYS 776
           EV  K ++ +D  + K+   +S H   CV+EYS
Sbjct: 272 EVATKTVEKIDPAE-KVGLLVSSHNHPCVVEYS 303


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 160 IICFKFLHYKATTSYSFY*NYLCF 89
           I+C + LHY+    +++Y  YLC+
Sbjct: 331 ILCARSLHYQFYAWFAWYSPYLCY 354


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 513 TEIEHILALTDKSDMNGFPQF--VCYMCAIDLHKCCQFIE 626
           +E+ H+ A       N   +F  V + C +D H+ C+F++
Sbjct: 814 SELSHMKATISLEGYNDCSEFTGVNFTCEVDWHESCKFLK 853


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 718 CFRSTFFISFSVTSPLCANTSSNVACVNKHFSMNWQH 608
           C++ +F+    + S LC   + ++AC NK  +  W+H
Sbjct: 335 CYKYSFY---GIRSHLCMEATPSLACANK-CTFCWRH 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,284,240
Number of Sequences: 5004
Number of extensions: 65448
Number of successful extensions: 174
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)