Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_E03
         (903 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical pr...    31   0.85 
AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family ...    30   2.0  

>U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical
           protein F49E10.5 protein.
          Length = 727

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 240 FHKFPANS-VLRAKCLNAIGRPNWDPPSYTRICSEHFD 350
           F++ P    +LR + L AIGR      S  RICS HF+
Sbjct: 25  FYRIPKRPLILRQRWLTAIGRTEETVVSQLRICSAHFE 62


>AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family
           protein 31 protein.
          Length = 747

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 359 YKMIKVLTTNSSVTWRVPVWSTYCIQTFRSQN 264
           Y  + V TT+S ++  VPVWS   + T  S N
Sbjct: 144 YFPVLVFTTSSGISLEVPVWSQKFVTTMTSSN 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,120,145
Number of Sequences: 27780
Number of extensions: 366872
Number of successful extensions: 928
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)