Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_E03
         (903 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        28   0.13 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        28   0.13 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        28   0.13 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   3.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   5.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   5.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   5.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   5.0  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 20/75 (26%), Positives = 34/75 (45%)
 Frame = +3

Query: 636 LTQATLLDVFAHNGEVTEKLIKNVDRKQLKLXKSLSIHKQTCVIEYSYGNELAPIKFDSK 815
           L  A  LDV   N   T+K+I+     +  L K  ++ +       +Y  ++ P K+D  
Sbjct: 366 LKNAKYLDVIERNSGATDKIIRWCTWSEGDLEKCKALTRA------AYSRDVRP-KYDCT 418

Query: 816 LEDEENTCKIXLXEN 860
           LE  ++ C   + EN
Sbjct: 419 LEKSQDDCLKAIKEN 433


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 20/75 (26%), Positives = 34/75 (45%)
 Frame = +3

Query: 636 LTQATLLDVFAHNGEVTEKLIKNVDRKQLKLXKSLSIHKQTCVIEYSYGNELAPIKFDSK 815
           L  A  LDV   N   T+K+I+     +  L K  ++ +       +Y  ++ P K+D  
Sbjct: 366 LKNAKYLDVIERNSGATDKIIRWCTWSEGDLEKCKALTRA------AYSRDVRP-KYDCT 418

Query: 816 LEDEENTCKIXLXEN 860
           LE  ++ C   + EN
Sbjct: 419 LEKSQDDCLKAIKEN 433


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 27.9 bits (59), Expect = 0.13
 Identities = 20/75 (26%), Positives = 34/75 (45%)
 Frame = +3

Query: 636 LTQATLLDVFAHNGEVTEKLIKNVDRKQLKLXKSLSIHKQTCVIEYSYGNELAPIKFDSK 815
           L  A  LDV   N   T+K+I+     +  L K  ++ +       +Y  ++ P K+D  
Sbjct: 366 LKNAKYLDVIERNSGATDKIIRWCTWSEGDLEKCKALTRA------AYSRDVRP-KYDCT 418

Query: 816 LEDEENTCKIXLXEN 860
           LE  ++ C   + EN
Sbjct: 419 LEKSQDDCLKAIKEN 433


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 450 VCCLCLANDVK 482
           +C LCLAN +K
Sbjct: 213 ICALCLANSIK 223



 Score = 21.8 bits (44), Expect = 8.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 582 NIQTAGTHSYLTYQLKPV 529
           N+Q  G HS   Y  KP+
Sbjct: 142 NLQCCGVHSLSDYNDKPI 159


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 169 YIIIICFKFLHYKATT 122
           Y + + F F+HYK T+
Sbjct: 474 YFMFLTFFFIHYKGTS 489


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 169 YIIIICFKFLHYKATT 122
           Y + + F F+HYK T+
Sbjct: 460 YFMFLTFFFIHYKGTS 475


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 169 YIIIICFKFLHYKATT 122
           Y + + F F+HYK T+
Sbjct: 494 YFMFLTFFFIHYKGTS 509


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 169 YIIIICFKFLHYKATT 122
           Y + + F F+HYK T+
Sbjct: 443 YFMFLTFFFIHYKGTS 458


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,180
Number of Sequences: 438
Number of extensions: 4462
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)