Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_E02
         (822 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    32   0.57 
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    32   0.57 
Z72510-1|CAA96651.1|  572|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    28   7.0  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    28   7.0  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    28   7.0  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    28   7.0  
AF016443-10|AAC24276.4|  325|Caenorhabditis elegans Serpentine r...    28   9.3  

>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = -1

Query: 780 PPGXXPXKKKKKGXGXXXPXPPXXFXXXGGGGPPPP 673
           PP   P +    G G   P PP      GG  PPPP
Sbjct: 317 PPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPP 352



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = -1

Query: 780 PPGXXPXKKKKKGXGXXXPXPPXXFXXXGGGGPPPP 673
           PPG  P      G     P PP  F   G GG PPP
Sbjct: 303 PPGRTPGPPGMPGM--PPPPPPSRFGPPGMGGMPPP 336


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = -1

Query: 780 PPGXXPXKKKKKGXGXXXPXPPXXFXXXGGGGPPPP 673
           PP   P +    G G   P PP      GG  PPPP
Sbjct: 327 PPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPP 362



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = -1

Query: 780 PPGXXPXKKKKKGXGXXXPXPPXXFXXXGGGGPPPP 673
           PPG  P      G     P PP  F   G GG PPP
Sbjct: 313 PPGRTPGPPGMPGM--PPPPPPSRFGPPGMGGMPPP 346


>Z72510-1|CAA96651.1|  572|Caenorhabditis elegans Hypothetical
           protein F53B7.2 protein.
          Length = 572

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 204 YYFYFNACLSQILINLIFSKGFYDLVTETFKSCLILIFI 88
           Y   FNA +S I++  +  K  Y+L+T+     LI+  I
Sbjct: 232 YSINFNAPISSIILTSLRQKSSYNLITKCIMYTLIMFII 270


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = -1

Query: 780 PPGXXPXKKKKKGXGXXXPXPPXXFXXXGGGGPPPP 673
           PP   P        G   P PP       GG PPPP
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 762


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = -1

Query: 780 PPGXXPXKKKKKGXGXXXPXPPXXFXXXGGGGPPPP 673
           PP   P        G   P PP       GG PPPP
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 762


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = -1

Query: 780 PPGXXPXKKKKKGXGXXXPXPPXXFXXXGGGGPPPP 673
           PP   P        G   P PP       GG PPPP
Sbjct: 310 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 345


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -1

Query: 765 PXKKKKKGXGXXXPXPPXXFXXXGGGGPP 679
           P    + G G     PP  F   GGGGPP
Sbjct: 783 PPPSFRGGRGGHGGPPPPHFDRRGGGGPP 811


>AF016443-10|AAC24276.4|  325|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 9 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = -1

Query: 267 EIXSTNLIYKMDISPFLLK*RYYFYFNACLSQILINLIFSKGFYDLVTETFKSCLIL 97
           E  ++   Y MD + + L  R+    N   ++   N++FS GF++ +      CLIL
Sbjct: 185 EKLNSKYYYAMDRASYSLSERFQITENIKTAKTFNNIVFSIGFFNTIVNV---CLIL 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,591,190
Number of Sequences: 27780
Number of extensions: 179559
Number of successful extensions: 447
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)